Information for motif11


Reverse Opposite:

p-value:1e-15
log p-value:-3.665e+01
Information Content per bp:1.674
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif12.42%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets76.2 +/- 46.7bp
Average Position of motif in Background132.0 +/- 37.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CACAGGTCAG-
CAAAGGTCAGA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CACAGGTCAG
CAAAGGTCAG

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CACAGGTCAG
---AGGTCA-

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CACAGGTCAG---
TCTCAAAGGTCACCTG

MA0103.2_ZEB1/Jaspar

Match Rank:5
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CACAGGTCAG-
--CAGGTGAGG

PB0049.1_Nr2f2_1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CACAGGTCAG---
TCTCAAAGGTCACGAG

MA0071.1_RORA_1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CACAGGTCAG
ATCAAGGTCA-

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CACAGGTCAG
ANGNAAAGGTCA-

MA0160.1_NR4A2/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CACAGGTCAG
--AAGGTCAC

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CACAGGTCAG
TCAAGGTCAN