Information for motif27


Reverse Opposite:

p-value:1e-12
log p-value:-2.871e+01
Information Content per bp:1.386
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif10.56%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets127.0 +/- 52.5bp
Average Position of motif in Background81.6 +/- 37.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TGGATGTCACTG----
-AGCTGTCACTCACCT

MA0067.1_Pax2/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGGATGTCACTG
----AGTCACGC

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGGATGTCACTG--
NNNCAGCTGTCAATATN

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGGATGTCACTG--
TNNNNGGTGTCATNTNT

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGGATGTCACTG-
AAGCACCTGTCAATAT

MA0488.1_JUN/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGGATGTCACTG
AAGATGATGTCAT--

MA0160.1_NR4A2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGGATGTCACTG
--AAGGTCAC--

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGGATGTCACTG-
-GSCTGTCACTCA

MA0071.1_RORA_1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGATGTCACTG
ATCAAGGTCA---

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGGATGTCACTG-
AATTACCTGTCAATAC