Information for motif30


Reverse Opposite:

p-value:1e-10
log p-value:-2.446e+01
Information Content per bp:1.769
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif7.45%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets82.3 +/- 58.3bp
Average Position of motif in Background85.4 +/- 46.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0507.1_POU2F2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAGACCAAA
ATATGCAAATNNN-

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ATGCAGACCAAA-
---NAAACCACAG

MA0511.1_RUNX2/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ATGCAGACCAAA------
---CAAACCACAAACCCC

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ATGCAGACCAAA---
---NWAACCACADNN

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATGCAGACCAAA
TTGTATGCAAATTAGA

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATGCAGACCAAA
TTGTATGCAAATTAGA

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAGACCAAA
TTATGCAAAT----

MA0002.2_RUNX1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ATGCAGACCAAA---
----AAACCACAGAN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ATGCAGACCAAA--
----AAACCACAGC

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:ATGCAGACCAAA--
----AAACCACANN