Information for motif37


Reverse Opposite:

p-value:1e-9
log p-value:-2.134e+01
Information Content per bp:1.672
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif8.70%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets97.0 +/- 52.4bp
Average Position of motif in Background65.5 +/- 57.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0171.1_Sox18_2/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTGTATTTAGTC-
NNNNTGAATTCANNNC

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTGTATTTAGTC---
GTACTAATTAGTGGCG

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTGTATTTAGTC
CTACTAGGATGTNNTN

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TTGTATTTAGTC-----
--NNAATTAGTCACGGT

PH0055.1_Hoxa7_2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TTGTATTTAGTC---
GTAGTAATTAATGGAA

PH0062.1_Hoxb7/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TTGTATTTAGTC---
GTAGTAATTAATGCAA

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TTGTATTTAGTC
TNNTTTCGTATTNNANN

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTGTATTTAGTC---
ANCGCTAATTGGTCTNN

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TTGTATTTAGTC------
-NANANTTAATCCCNNNN

PH0081.1_Pdx1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TTGTATTTAGTC---
AAGGTAATTAGCTCAT