Information for motif39


Reverse Opposite:

p-value:1e-7
log p-value:-1.638e+01
Information Content per bp:1.866
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif9.94%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif2.19%
Average Position of motif in Targets92.2 +/- 53.2bp
Average Position of motif in Background100.7 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCTGACCA
--TGACCT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TCTGACCA
VBSYGTCTGG---

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCTGACCA
GCTGTG--

MA0512.1_Rxra/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCTGACCA---
NCTGACCTTTG

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCTGACCA---
-CTGACCTTTG

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------TCTGACCA-
CCNNACCATCTGGCCTN

POL002.1_INR/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TCTGACCA
NNNANTGA---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCTGACCA
CTGTCTGG---

MA0596.1_SREBF2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCTGACCA-
ATCACCCCAT

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------TCTGACCA--
NNTNNTGTCTGGNNTNG