Information for motif42


Reverse Opposite:

p-value:1e-4
log p-value:-1.063e+01
Information Content per bp:1.667
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif5.59%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets119.9 +/- 45.1bp
Average Position of motif in Background183.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTGGGCTTCA
----GCTTCC

MA0505.1_Nr5a2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTGGGCTTCA----
GCTGACCTTGAACTN

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGGGCTTCA-
-TGACCTTGAN

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTGGGCTTCA--
--TGGTTTCAGT

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGGGCTTCA-
-TGACCTTGAV

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTGGGCTTCA
---NGCTN--

CHR/Cell-Cycle-Exp/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTGGGCTTCA--
--CGGTTTCAAA

MA0141.2_Esrrb/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTGGGCTTCA---
-TGACCTTGANNN

MA0160.1_NR4A2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGGGCTTCA
GTGACCTT--

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTGGGCTTCA---
NNATTGGACTTTNGNN