Information for motif7


Reverse Opposite:

p-value:1e-18
log p-value:-4.314e+01
Information Content per bp:1.912
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif11.18%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets87.9 +/- 63.9bp
Average Position of motif in Background111.5 +/- 41.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TGTTTGAC---
NTGATTGACAGN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGTTTGAC----
TGAGTGACAGSC

MA0070.1_PBX1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTGAC--
TTTGATTGATGN

MA0153.1_HNF1B/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TGTTTGAC
TTAATATTTAAC

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGTTTGAC-
AGGTGHCAGACA

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGTTTGAC----
NNANTGATTGATNTTN

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGTTTGAC--------
GTATTGACAGGTNNTT

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGTTTGAC--------
GGATTGACAGGTCNTT

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGTTTGAC--------
GTATTGACAGCTNNTT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGTTTGAC--
----TGACCT