Information for motif13


Reverse Opposite:

p-value:1e-16
log p-value:-3.903e+01
Information Content per bp:1.441
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif29.13%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif5.27%
Average Position of motif in Targets96.9 +/- 52.7bp
Average Position of motif in Background105.5 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0160.1_NR4A2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGCCAVT
AAGGTCAC-

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGGCCAVT---
-AGCCAATCGG

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGCCAVT
AGGTCA--

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGGCCAVT
-TGCCAA-

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGCCAVT--
ACTAGCCAATCA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGCCAVT
CAAAGGTCAG-

MA0078.1_Sox17/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGGCCAVT---
--GACAATGNN

MA0071.1_RORA_1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGGCCAVT
ATCAAGGTCA--

MA0512.1_Rxra/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGGCCAVT
CAAAGGTCAGA

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGCCAVT--
AAGGCAAGTGT