Information for motif19


Reverse Opposite:

p-value:1e-15
log p-value:-3.490e+01
Information Content per bp:1.621
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif23.30%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif4.06%
Average Position of motif in Targets84.7 +/- 47.9bp
Average Position of motif in Background138.2 +/- 79.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGACTGGTG------
GAAAACTAGTTAACATC

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAGACTGGTG
BCAGACWA---

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AAGACTGGTG--
--NNCAGGTGNN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AAGACTGGTG-
AAGGCAAGTGT

PB0047.1_Myf6_1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAGACTGGTG----
GAAGAACAGGTGTCCG

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAGACTGGTG
TAATCCCN---

MA0103.2_ZEB1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AAGACTGGTG---
----CAGGTGAGG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AAGACTGGTG
CCAGACAG---

MA0499.1_Myod1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-AAGACTGGTG--
NGNGACAGCTGCN

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AAGACTGGTG------
ATCCACAGGTGCGAAAA