Information for motif25


Reverse Opposite:

p-value:1e-13
log p-value:-3.021e+01
Information Content per bp:1.694
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif21.36%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif3.66%
Average Position of motif in Targets91.4 +/- 46.6bp
Average Position of motif in Background69.6 +/- 8.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0084.1_SRY/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTTTAACAAG
-GTAAACAAT

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAACAAG-----
GANGTTAACTAGTTTNN

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAACAAG----
ANATTTTACGAGNNNN

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAACAAG----
NAATTTTACGAGNTNN

PH0168.1_Hnf1b/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTTTAACAAG----
AGCTGTTAACTAGCCGT

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GTTTAACAAG
----AACAAT

PH0085.1_Irx4/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTTTAACAAG------
NNTTTTACATGTANNNT

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTTTAACAAG
---NAACAAT

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTTTAACAAG---
AAAAATAACAAACGG

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTTTAACAAG-
-TTTTATTRGN