Information for motif27


Reverse Opposite:

p-value:1e-13
log p-value:-3.021e+01
Information Content per bp:1.613
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif21.36%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif3.48%
Average Position of motif in Targets106.0 +/- 63.2bp
Average Position of motif in Background121.4 +/- 42.4bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---ATCCATCC-
GYCATCMATCAT

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATCCATCC
NTATYGATCH

MA0070.1_PBX1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATCCATCC--
CCATCAATCAAA

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATCCATCC-------
NNNTCCATCCCATAANN

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATCCATCC----
GAAGATCAATCACTTA

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATCCATCC----
GAAGATCAATCACTAA

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATCCATCC
TCATCAATCA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATCCATCC
RGCCATYAATCA

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATCCATCC-------
TCACCCATCAATAAACA

PB0028.1_Hbp1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ATCCATCC-----
NNCATTCATTCATNNN