Information for motif28


Reverse Opposite:

p-value:1e-13
log p-value:-3.021e+01
Information Content per bp:1.734
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif21.36%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif3.22%
Average Position of motif in Targets85.6 +/- 49.6bp
Average Position of motif in Background145.9 +/- 55.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TATAACCC--
--TAATCCCN

PB0185.1_Tcf1_2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TATAACCC------
NNTAATCCNGNCNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TATAACCC
GCTAATCC

PH0126.1_Obox6/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TATAACCC------
CNATAATCCGNTTNT

MA0467.1_Crx/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TATAACCC----
-CTAATCCTCTT

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TATAACCC------
NNNATTAATCCGNTTNA

PB0163.1_Six6_2/Jaspar

Match Rank:7
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TATAACCC---
ATGGGATATATCCGCCT

PB0143.1_Klf7_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TATAACCC------
AAGCATACGCCCAACTT

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TATAACCC------
NTTGTTAATCCCTCTNN

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TATAACCC-----
NANANTTAATCCCNNNN