Information for motif3


Reverse Opposite:

p-value:1e-31
log p-value:-7.342e+01
Information Content per bp:1.669
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif30.10%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif2.05%
Average Position of motif in Targets91.0 +/- 54.8bp
Average Position of motif in Background149.5 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ACATAGGA
TATACATA---

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ACATAGGA-------
CTACTAGGATGTNNTN

PB0128.1_Gcm1_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ACATAGGA------
TGCGCATAGGGGAGGAG

MA0109.1_Hltf/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACATAGGA
AACCTTATAT

PB0106.1_Arid5a_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACATAGGA-----
CATACAATACGAAATAA

PB0115.1_Ehf_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACATAGGA-------
AAGATCGGAANTNNNA

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ACATAGGA
CCAAAAATAG--

MA0035.3_Gata1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACATAGGA-
ANAGATAAGAA

MA0482.1_Gata4/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ACATAGGA
NNGAGATAAGA

MA0037.2_GATA3/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ACATAGGA
AGATAAGA