Information for motif30


Reverse Opposite:

p-value:1e-12
log p-value:-2.795e+01
Information Content per bp:1.530
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif20.39%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif3.91%
Average Position of motif in Targets96.8 +/- 46.3bp
Average Position of motif in Background111.2 +/- 63.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCTC----
NANANTTAATCCCNNNN

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCTC----
GANNATTAATCCCTNNN

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCTC----
GNNNATTAATCCCTNCN

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----TTAATCTC----
GATAATTAATCCCTCTT

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCTC-----
NTTGTTAATCCCTCTNN

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCTC-----
ATAGTTAATCCCCCNNA

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCTC----
NNNAATTAATCCCCNCN

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCTC-----
NTAGTTAATCCCCTTAN

PH0122.1_Obox2/Jaspar

Match Rank:9
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCTC-----
ATAGTTAATCCCCCTCA

MA0151.1_ARID3A/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TTAATCTC
TTTAAT---