Information for motif33


Reverse Opposite:

p-value:1e-9
log p-value:-2.244e+01
Information Content per bp:1.737
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif13.59%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif2.47%
Average Position of motif in Targets59.7 +/- 35.3bp
Average Position of motif in Background77.0 +/- 45.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----ACAAAACAAA---
AACACCAAAACAAAGGA

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---ACAAAACAAA---
ATATCAAAACAAAACA

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:ACAAAACAAA--
--AAAACAAAGG

MA0481.1_FOXP1/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ACAAAACAAA-
CAAAAGTAAACAAAG

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ACAAAACAAA------
ATAAGAACAAAGGACTA

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ACAAAACAAA------
AGAAGAACAAAGGACTA

PB0016.1_Foxj1_1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ACAAAACAAA----
AAAGTAAACAAAAATT

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACAAAACAAA---
AAAAATAACAAACGG

MA0515.1_Sox6/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ACAAAACAAA--
--AAAACAATGG

MA0084.1_SRY/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ACAAAACAAA
-GTAAACAAT