Information for motif40


Reverse Opposite:

p-value:1e-6
log p-value:-1.569e+01
Information Content per bp:1.530
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif14.56%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif3.66%
Average Position of motif in Targets105.7 +/- 58.4bp
Average Position of motif in Background142.4 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CCCCACTT--
-NCCACTTAN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCCCACTT------
CTTAACCACTTAAGGAT

PB0201.1_Zfp281_2/Jaspar

Match Rank:3
Score:0.69
Offset:-7
Orientation:forward strand
Alignment:-------CCCCACTT--
AGGAGACCCCCAATTTG

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CCCCACTT------
CATAACCACTTAACAAC

MA0056.1_MZF1_1-4/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCCACTT
TCCCCA---

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCCCACTT------
TAAGCCACTTGAATTT

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCCCACTT------
TAAGCCACTTAACATT

MA0130.1_ZNF354C/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCCCACTT
ATCCAC--

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCCCACTT------
TAAGCCACTTGAAATT

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCCCACTT-------
ATAACCACTTGAAAATT