Information for motif8


Reverse Opposite:

p-value:1e-22
log p-value:-5.291e+01
Information Content per bp:1.910
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif30.10%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif3.66%
Average Position of motif in Targets117.8 +/- 62.4bp
Average Position of motif in Background111.1 +/- 16.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CAATRTCC
GACAATGNN-

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAATRTCC--
AAGATATCCTT

PB0014.1_Esrra_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CAATRTCC-----
TATTCAAGGTCATGCGA

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CAATRTCC-
NNTNNCAATATTAG

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.64
Offset:-8
Orientation:forward strand
Alignment:--------CAATRTCC-
TCACGGAACAATAGGTG

MA0592.1_ESRRA/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAATRTCC--
CCAAGGTCACA

MA0087.1_Sox5/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAATRTCC
NAACAAT----

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAATRTCC
AACAAT----

MA0141.2_Esrrb/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CAATRTCC
AGCTCAAGGTCA

MA0084.1_SRY/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAATRTCC
GTAAACAAT----