Information for motif9


Reverse Opposite:

p-value:1e-20
log p-value:-4.740e+01
Information Content per bp:1.611
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif22.33%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif1.98%
Average Position of motif in Targets95.7 +/- 54.7bp
Average Position of motif in Background146.4 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0087.1_Sox5/Jaspar

Match Rank:1
Score:0.85
Offset:2
Orientation:forward strand
Alignment:GCATTGTT-
--ATTGTTA

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.85
Offset:2
Orientation:forward strand
Alignment:GCATTGTT
--ATTGTT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GCATTGTT--
CCATTGTTNY

MA0515.1_Sox6/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GCATTGTT--
CCATTGTTTT

MA0442.1_SOX10/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GCATTGTT
-CTTTGT-

MA0084.1_SRY/Jaspar

Match Rank:6
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:GCATTGTT---
--ATTGTTTAN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GCATTGTT-
NCCATTGTTC

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----GCATTGTT----
ANNTCCATTGTTCNNN

MA0077.1_SOX9/Jaspar

Match Rank:9
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GCATTGTT-
CCATTGTTC

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GCATTGTT------
TTCAATTGTTCTAAAA