Information for motif2


Reverse Opposite:

p-value:1e-20
log p-value:-4.756e+01
Information Content per bp:1.704
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets92.5 +/- 59.9bp
Average Position of motif in Background122.3 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGTMTCTSAG---
NTNNCGTATCCAAGTNN

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TGTMTCTSAG-
ANTCCTTTGTCTNNNN

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGTMTCTSAG--
CTGTCTGTCACCT

MA0033.1_FOXL1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGTMTCTSAG
TATGTNTA--

MA0037.2_GATA3/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGTMTCTSAG
TCTTATCT---

MA0035.3_Gata1/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGTMTCTSAG
TTCTTATCTGT---

PB0126.1_Gata5_2/Jaspar

Match Rank:7
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------TGTMTCTSAG
NNNCTGATATCTCNNNN

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGTMTCTSAG
YSTTATCT---

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGTMTCTSAG--
TGTCTGDCACCT

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------TGTMTCTSAG-------
NNTNGNNGTAACCAAGNNNNAGN