Information for motif31


Reverse Opposite:

p-value:1e-7
log p-value:-1.637e+01
Information Content per bp:1.820
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif11.84%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif1.55%
Average Position of motif in Targets98.7 +/- 54.0bp
Average Position of motif in Background121.2 +/- 44.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0075.1_Prrx2/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GCTAATTC
--TAATT-

MA0132.1_Pdx1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCTAATTC
-CTAATT-

PH0032.1_Evx2/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCTAATTC-----
CACCGCTAATTAGCGGT

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCTAATTC
NCTAATTA

PH0036.1_Gsx2/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTC----
NTNNGCTAATTANCNT

PH0045.1_Hoxa1/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCTAATTC----
CTGAGCTAATTACCGT

PH0131.1_Pax4/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTC-----
NNGNGCTAATTAGNTNA

PH0098.1_Lhx8/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTC-----
CACCGCTAATTAGNNGN

PB0031.1_Hoxa3_1/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCTAATTC--
TGGAGGTAATTAAC

PH0097.1_Lhx6_2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTC-----
NNNCGCTAATTAGNNGA