Information for motif33


Reverse Opposite:

p-value:1e-5
log p-value:-1.379e+01
Information Content per bp:1.795
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif10.53%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets102.3 +/- 52.6bp
Average Position of motif in Background76.0 +/- 42.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0042.1_FOXI1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGAWKTTTGTYT
GGATGTTTGTTT

PB0016.1_Foxj1_1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGAWKTTTGTYT-----
-NNNNTTTGTTTACNNT

MA0041.1_Foxd3/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGAWKTTTGTYT
GAATGTTTGTTT

MA0514.1_Sox3/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AGAWKTTTGTYT-
---CCTTTGTTTT

MA0481.1_FOXP1/Jaspar

Match Rank:5
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AGAWKTTTGTYT-------
----CTTTGTTTACTTTTN

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGAWKTTTGTYT----
ANTCCTTTGTCTNNNN

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGAWKTTTGTYT--
-----ATTGTTTAN

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGAWKTTTGTYT----
TNNTCCTTTGTTCTNNT

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AGAWKTTTGTYT
-----ATTGTT-

PB0017.1_Foxj3_1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGAWKTTTGTYT-------
--NNNTTTGTTTACNTTNN