Information for motif34


Reverse Opposite:

p-value:1e-4
log p-value:-1.100e+01
Information Content per bp:1.710
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif14.47%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif3.30%
Average Position of motif in Targets102.2 +/- 54.7bp
Average Position of motif in Background85.6 +/- 42.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATCAA
CTACCAATAAAATTCT

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATCAA-
AATGCAATAAAATTTAT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ATAAAATCAA
GTCATAAAAN---

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ATAAAATCAA
NCYAATAAAA----

MA0465.1_CDX2/Jaspar

Match Rank:5
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----ATAAAATCAA
AAGCCATAAAA----

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATCAA-
ACGGCCATAAAATTAAT

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATCAA
TAGGTAATAAAATTCA

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATCAA
AGAGCCATAAAATTCG

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATCAA
AACCCAATAAAATTCG

PB0125.1_Gata3_2/Jaspar

Match Rank:10
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------ATAAAATCAA-----
NNNNNCGATANNATCTNNNNAN