Information for motif9


Reverse Opposite:

p-value:1e-15
log p-value:-3.493e+01
Information Content per bp:1.552
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif2.66%
Average Position of motif in Targets92.9 +/- 64.3bp
Average Position of motif in Background72.1 +/- 44.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GAGTTAGTAT
---TAAGTAT

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGTTAGTAT
-GGTAAGTA-

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGTTAGTAT
-AATTAG---

MA0046.1_HNF1A/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGTTAGTAT-----
-GGTTAATAATTAAC

PH0092.1_Lhx2/Jaspar

Match Rank:5
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GAGTTAGTAT-
NNNNNCTAATTAGTTTA

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTAGTAT
TGAGTCAGCA-

MA0122.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAGTTAGTAT-
--TTAAGTGGA

PB0122.1_Foxk1_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTAGTAT---
NNNTGTTGTTGTTNG

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTAGTAT------
TNNTTTCGTATTNNANN

PB0155.1_Osr2_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTAGTAT-----
NNTGTAGGTAGCANNT