Information for motif22


Reverse Opposite:

p-value:1e-19
log p-value:-4.464e+01
Information Content per bp:1.530
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets84.1 +/- 64.8bp
Average Position of motif in Background20.2 +/- 1.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---GGCCAATCAC
ACTAGCCAATCA-

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGCCAATCAC
AGCCAATCGG

MA0502.1_NFYB/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----GGCCAATCAC
AAATGGACCAATCAG

MA0038.1_Gfi1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GGCCAATCAC--
--CAAATCACTG

MA0060.2_NFYA/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAATCAC------
TGGACCAATCAGCACTCT

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGCCAATCAC
TGCCAA----

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATCAC
NCTGTCAATCAN

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAATCAC--
NAGGTCANTGACCT

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATCAC-----
CGACCCAATCAACGGTG

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGCCAATCAC---
---AAATCACTGC