Information for motif5


Reverse Opposite:

p-value:1e-144
log p-value:-3.338e+02
Information Content per bp:1.678
Number of Target Sequences with motif1369.0
Percentage of Target Sequences with motif6.94%
Number of Background Sequences with motif972.5
Percentage of Background Sequences with motif3.23%
Average Position of motif in Targets101.2 +/- 53.1bp
Average Position of motif in Background101.8 +/- 55.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--RTCAAAGGTC
ACATCAAAGG--

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--RTCAAAGGTC
ACWTCAAAGG--

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:3
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----RTCAAAGGTC--
NNNAGATCAAAGGANNN

PB0040.1_Lef1_1/Jaspar

Match Rank:4
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----RTCAAAGGTC--
NANAGATCAAAGGGNNN

MA0484.1_HNF4G/Jaspar

Match Rank:5
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----RTCAAAGGTC-
AGAGTCCAAAGTCCA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:6
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--RTCAAAGGTC
ACATCAAAGGNA

MA0523.1_TCF7L2/Jaspar

Match Rank:7
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----RTCAAAGGTC
AAAGATCAAAGGAA

MA0017.1_NR2F1/Jaspar

Match Rank:8
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---RTCAAAGGTC-
AGGTTCAAAGGTCA

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----RTCAAAGGTC--
TATAGATCAAAGGAAAA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.80
Offset:2
Orientation:forward strand
Alignment:RTCAAAGGTC--
--CAAAGGTCAG