Information for motif10


Reverse Opposite:

p-value:1e-53
log p-value:-1.231e+02
Information Content per bp:1.651
Number of Target Sequences with motif863.0
Percentage of Target Sequences with motif4.37%
Number of Background Sequences with motif747.7
Percentage of Background Sequences with motif2.48%
Average Position of motif in Targets96.7 +/- 55.5bp
Average Position of motif in Background101.1 +/- 60.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0132.1_Pax6/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TGATTAATTA------
TGATTAATTAATTGAC

PH0070.1_Hoxc5/Jaspar

Match Rank:2
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TGATTAATTA-----
NNTNATTAATTAATTCG

PH0099.1_Lhx9/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TGATTAATTA-----
NGTNATTAATTAATGNG

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:4
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--TGATTAATTA----
AGTAATTAATTACTTC

PH0142.1_Pou1f1/Jaspar

Match Rank:5
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TGATTAATTA---
GANTTAATTAATTANNN

PH0173.1_Uncx/Jaspar

Match Rank:6
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--TGATTAATTA-----
CATAATTAATTAACGCG

PH0059.1_Hoxb4/Jaspar

Match Rank:7
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--TGATTAATTA-----
GNTNATTAATTAACNNG

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TGATTAATTA
TGATTGATGA

PH0149.1_Pou3f4/Jaspar

Match Rank:9
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TGATTAATTA---
GANTTAATTAATTAANN

PH0146.1_Pou3f1/Jaspar

Match Rank:10
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TGATTAATTA---
NANTTAATTAATTANNN