Information for motif27


Reverse Opposite:

p-value:1e-10
log p-value:-2.508e+01
Information Content per bp:1.895
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets88.8 +/- 58.2bp
Average Position of motif in Background133.3 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGTGGTCTAT----
NNATTGGACTTTNGNN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGGTCTAT--
NNANTGGTGGTCTTNNN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CGTGGTCTAT
NNHTGTGGTTWN-

MA0002.2_RUNX1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTGGTCTAT
GTCTGTGGTTT--

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGTGGTCTAT
CTGTGGTTTN-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CGTGGTCTAT
GCTGTGGTTT--

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGTGGTCTAT
NNTGTGGTTT--

MA0511.1_RUNX2/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CGTGGTCTAT
GGGGTTTGTGGTTTG-

MA0130.1_ZNF354C/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGTGGTCTAT
-GTGGAT---

PB0194.1_Zbtb12_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGTGGTCTAT-----
AGNGTTCTAATGANN