Information for motif26


Reverse Opposite:

p-value:1e-11
log p-value:-2.758e+01
Information Content per bp:1.882
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets98.3 +/- 52.8bp
Average Position of motif in Background100.1 +/- 40.7bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)3.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0089.1_Isx/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCTAAATGGGAT-
ACNNCTAATTAGNNNN

PH0107.1_Msx2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCTAAATGGGAT--
ANCGCTAATTGGTCTNN

PH0098.1_Lhx8/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAATGGGAT-
CACCGCTAATTAGNNGN

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTAAATGGGAT
-CTAATKGV---

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTAAATGGGAT------
-TATTATGGGATGGATAA

PH0032.1_Evx2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCTAAATGGGAT-
CACCGCTAATTAGCGGT

PH0094.1_Lhx4/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAATGGGAT-
CAAAGCTAATTAGNTTN

PH0097.1_Lhx6_2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAATGGGAT-
NNNCGCTAATTAGNNGA

PH0034.1_Gbx2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAATGGGAT-
AANCGCTAATTAGCNNN

PB0169.1_Sox15_2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCTAAATGGGAT----
-TTGAATGAAATTCGA