Information for motif13


Reverse Opposite:

p-value:1e-34
log p-value:-8.038e+01
Information Content per bp:1.572
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets88.2 +/- 52.4bp
Average Position of motif in Background190.0 +/- 1.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0090.1_Lbx2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGTCTADCTGA-----
TGCATTAATTAATGCGA

MA0072.1_RORA_2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGGTCTADCTGA-
TTGACCTANTTATN

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGTCTADCTGA----
GAAAACTAGTTAACATC

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGTCTADCTGA----
TAAGCCACTTGAATTT

PH0036.1_Gsx2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGGTCTADCTGA---
NTNNGCTAATTANCNT

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGGTCTADCTGA
---GCCATCTG-

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGTCTADCTGA----
CTTAACCACTTAAGGAT

PH0110.1_Nkx1-2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGTCTADCTGA-----
TGNACTAATTAGTGNAN

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGGTCTADCTGA----
TAAGCCACTTGAAATT

PB0154.1_Osr1_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGTCTADCTGA---
ACATGCTACCTAATAC