Information for motif2


Reverse Opposite:

p-value:1e-293
log p-value:-6.748e+02
Information Content per bp:1.505
Number of Target Sequences with motif1307.0
Percentage of Target Sequences with motif6.62%
Number of Background Sequences with motif605.2
Percentage of Background Sequences with motif2.01%
Average Position of motif in Targets101.6 +/- 52.2bp
Average Position of motif in Background99.8 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0046.1_HNF1A/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---AATNATTAAC-
GNTAATNATTAACC

MA0153.1_HNF1B/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--AATNATTAAC
TTAATATTTAAC

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:3
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--AATNATTAAC-
TTAATGTTTAACC

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AATNATTAAC
AATTATT---

PH0051.1_Hoxa4/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AATNATTAAC---
GATTATTAATTAACTTG

PH0019.1_Dbx2/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AATNATTAAC----
NAATTAATTAATTNNN

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AATNATTAAC
--YCATTAMC

PH0120.1_Nkx6-3/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATNATTAAC----
CNNANTAATTAATTNNC

PH0059.1_Hoxb4/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AATNATTAAC---
GNTNATTAATTAACNNG

PB0109.1_Bbx_2/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AATNATTAAC------
TGATTGTTAACAGTTGG