Information for motif12


Reverse Opposite:

p-value:1e-37
log p-value:-8.546e+01
Information Content per bp:1.684
Number of Target Sequences with motif1109.0
Percentage of Target Sequences with motif5.62%
Number of Background Sequences with motif1133.7
Percentage of Background Sequences with motif3.76%
Average Position of motif in Targets101.4 +/- 54.3bp
Average Position of motif in Background97.4 +/- 56.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:ATTTGCAK--
ATTTGCATAA

PH0145.1_Pou2f3/Jaspar

Match Rank:2
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCAK----
TNTAATTTGCATACNA

MA0507.1_POU2F2/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---ATTTGCAK--
TTCATTTGCATAT

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCAK----
TNTAATTTGCATANNN

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:ATTTGCAK--
ATTTGCATAT

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATTTGCAK-------
ATTTGCATAACAATG

MA0132.1_Pdx1/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATTTGCAK
AATTAG---

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATTTGCAK-------
ATTTGCATAACAAAG

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATTTGCAK
CCGATTGGCT-

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------ATTTGCAK--
ACCCCTAATTAGCGGTG