Information for motif28


Reverse Opposite:

p-value:1e-8
log p-value:-1.960e+01
Information Content per bp:1.530
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets99.0 +/- 65.9bp
Average Position of motif in Background120.5 +/- 36.8bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0009.1_T/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CACACTTAGT
TTCACACCTAG-

MA0122.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CACACTTAGT
NCCACTTAN-

MA0124.1_NKX3-1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CACACTTAGT
-ATACTTA--

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CACACTTAGT
-BCMATTAG-

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CACACTTAGT
KTTCACACCT---

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CACACTTAGT
AAGCACTTAA-

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CACACTTAGT---
CATAACCACTTAACAAC

MA0063.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CACACTTAGT
--CAATTAA-

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CACACTTAGT---
CTTAACCACTTAAGGAT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CACACTTAGT
AASCACTCAA-