Information for motif17


Reverse Opposite:

p-value:1e-28
log p-value:-6.471e+01
Information Content per bp:1.919
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets94.2 +/- 57.4bp
Average Position of motif in Background140.0 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:1
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCAHTGTGACAC--
----KTTCACACCT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GCAHTGTGACAC--
------TGACACCT

MA0258.2_ESR2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCAHTGTGACAC
AGGNCANNGTGACCT

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAHTGTGACAC
GWAAYHTGABMC

Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCAHTGTGACAC
GTAGGTCACTGGGTCA-

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAHTGTGACAC------
-ATAAATGACACCTATCA

MA0119.1_TLX1::NFIC/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCAHTGTGACAC
TTGGCATGGTGCCA-

ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCAHTGTGACAC-
GGTCANNGTGACCTN

MA0078.1_Sox17/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCAHTGTGACAC
CTCATTGTC----

MA0498.1_Meis1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCAHTGTGACAC--
NNNTGAGTGACAGCT