Information for motif38


Reverse Opposite:

p-value:1e-16
log p-value:-3.857e+01
Information Content per bp:1.957
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets96.5 +/- 61.5bp
Average Position of motif in Background73.2 +/- 50.5bp
Strand Bias (log2 ratio + to - strand density)4.2
Multiplicity (# of sites on avg that occur together)2.71
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:5
Orientation:forward strand
Alignment:AGTATCTGTCTG-
-----CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGTATCTGTCTG-
---VBSYGTCTGG

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGTATCTGTCTG------
-NNTNNTGTCTGGNNTNG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AGTATCTGTCTG-
-----TWGTCTGV

bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGTATCTGTCTG-----
NAGTTTCABTHTGACTNW

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGTATCTGTCTG---
AACTAGCTGTCAATAC

MA0498.1_Meis1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGTATCTGTCTG------
---AGCTGTCACTCACCT

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGTATCTGTCTG---
AATTACCTGTCAATAC

PB0036.1_Irf6_1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----AGTATCTGTCTG
NNNTTGGTTTCGNTNNN

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGTATCTGTCTG------
-----CTGTCTGTCACCT