Information for motif40


Reverse Opposite:

p-value:1e-13
log p-value:-3.108e+01
Information Content per bp:1.581
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif24.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets95.3 +/- 52.9bp
Average Position of motif in Background96.8 +/- 51.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.46
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:DCTGCTGTSTGT
GCAGCTGTNN--

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:DCTGCTGTSTGT
-CAGCTGTT---

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-DCTGCTGTSTGT
ANCAGCTG-----

MA0521.1_Tcf12/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--DCTGCTGTSTGT
NNGCAGCTGTT---

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--DCTGCTGTSTGT
CAGCAGCTGN----

MA0500.1_Myog/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--DCTGCTGTSTGT
NNGCAGCTGTC---

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:DCTGCTGTSTGT
HCAGCTGDTN--

MA0522.1_Tcf3/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--DCTGCTGTSTGT
NTGCAGCTGTG---

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--DCTGCTGTSTGT
BAACAGCTGT----

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---DCTGCTGTSTGT
NNAGCAGCTGCT---