Information for motif12


Reverse Opposite:

p-value:1e-52
log p-value:-1.206e+02
Information Content per bp:1.603
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets83.0 +/- 48.1bp
Average Position of motif in Background168.3 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GTCGATTADC
TTGCCCGGATTAGG

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GTCGATTADC
--GGATTAGC

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GTCGATTADC--
CGTTGGGGATTAGCCT

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GTCGATTADC----
AGGGGGATTAGCTGCC

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTCGATTADC----
NNAAGGGATTAACGANT

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GTCGATTADC---
TGAGGGGGATTAACTAT

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTCGATTADC--
TCCGTCGCTTAAAAG

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTCGATTADC---
TTAAGGGGATTAACTAC

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GTCGATTADC----
AGAGGGGATTAATTTAT

PH0122.1_Obox2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTCGATTADC---
TGAGGGGGATTAACTAT