Information for motif39


Reverse Opposite:

p-value:1e-14
log p-value:-3.375e+01
Information Content per bp:1.788
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets110.3 +/- 43.7bp
Average Position of motif in Background153.5 +/- 40.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0108.1_Atf1_2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CCTRTGACRA-----
-GAATGACGAATAAC

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCTRTGACRA
--CATGAC--

MA0067.1_Pax2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTRTGACRA
-NCGTGACN-

MA0526.1_USF2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTRTGACRA
GTCATGTGACC-

MA0093.2_USF1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCTRTGACRA
GCCACGTGACC-

PB0032.1_IRC900814_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCTRTGACRA-----
ATTTACGACAAATAGC

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTRTGACRA-----
ACCGTGACTAATTNN

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCTRTGACRA
----TGACGT

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTRTGACRA
ACCACGTGAC--

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTRTGACRA-
TGACCTTTGACCTC