Information for motif36


Reverse Opposite:

p-value:1e-17
log p-value:-4.122e+01
Information Content per bp:1.944
Number of Target Sequences with motif223.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif296.9
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets95.5 +/- 58.2bp
Average Position of motif in Background103.9 +/- 57.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0171.1_Nkx2-1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCCACTAG-----
TAAGCCACTTGAAATT

MA0122.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCCACTAG-
NCCACTTAN

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCCACTAG----------
TGGCCACCAGGTGGCACTNT

MA0139.1_CTCF/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCCACTAG---------
TGGCCACCAGGGGGCGCTA

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCACTAG------
ATAACCACTTGAAAATT

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCACTAG-----
TAAGCCACTTGAAATT

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCACTAG-----
TAAGCCACTTGAATTT

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCACTAG
BCMATTAG

MA0130.1_ZNF354C/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCACTAG
ATCCAC---

MA0161.1_NFIC/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCACTAG
TGCCAA---