Information for motif42


Reverse Opposite:

p-value:1e-7
log p-value:-1.700e+01
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets102.7 +/- 56.5bp
Average Position of motif in Background109.4 +/- 79.5bp
Strand Bias (log2 ratio + to - strand density)2.1
Multiplicity (# of sites on avg that occur together)2.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0062.1_Hoxb7/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TCAGTAGTTA----
TNNCATTAATTANTNC

PH0023.1_Dlx4/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCAGTAGTTA------
GTCGGTAATTATNGNGN

PH0039.1_Mnx1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCAGTAGTTA----
NNNCACTAATTANTNN

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCAGTAGTTA-----
GAAAACTAGTTAACATC

PH0117.1_Nkx3-1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCAGTAGTTA---
NATTTAAGTACTTANNA

PH0055.1_Hoxa7_2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCAGTAGTTA------
GTAGTAATTAATGGAA

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TCAGTAGTTA--
ATTTACAGTAGCAAAA

PH0008.1_Barx2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCAGTAGTTA------
TAAGTAATTAGTTATA

PH0071.1_Hoxc6/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCAGTAGTTA-----
NNTNATTAATTAATTTG

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TCAGTAGTTA-
HWWGTCAGCAWWTTT