Information for motif28


Reverse Opposite:

p-value:1e-27
log p-value:-6.250e+01
Information Content per bp:1.530
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets74.9 +/- 62.3bp
Average Position of motif in Background154.9 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0140.1_Pknox1/Jaspar

Match Rank:1
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCATAC-
AAAGACCTGTCAATCC

PH0105.1_Meis3/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCATAC-
AATTACCTGTCAATAC

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCTGTCATAC----
AGCTGTCACTCACCT

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCATAC-
AAGCACCTGTCAATAT

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCATAC-
AAAGACCTGTCAATAC

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGTCATAC--
NNNCAGCTGTCAATATN

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCATAC-
AACGAGCTGTCAATAC

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:8
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CCTGTCATAC
---GTCATN-

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCTGTCATAC-
GSCTGTCACTCA

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCTGTCATAC--
NCTGTCAATCAN