Information for motif7


Reverse Opposite:

p-value:1e-62
log p-value:-1.433e+02
Information Content per bp:1.860
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets99.1 +/- 58.3bp
Average Position of motif in Background109.3 +/- 38.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0175.1_Vax2/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GRCTAATTAAGG-
GTGCACTAATTAAGAC

PH0135.1_Phox2a/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GRCTAATTAAGG---
NNACTAATTAATNNNN

PH0159.1_Rhox6/Jaspar

Match Rank:3
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GRCTAATTAAGG--
NNGCATTAATTAANGCA

PH0011.1_Alx1_2/Jaspar

Match Rank:4
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GRCTAATTAAGG--
NNNAATTAATTAANGNG

PH0160.1_Shox2/Jaspar

Match Rank:5
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GRCTAATTAAGG--
NNNAATTAATTAANNNG

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GRCTAATTAAGG
-NCTAATTA---

PH0002.1_Alx4/Jaspar

Match Rank:7
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GRCTAATTAAGG--
GNNNATTAATTAATGCG

PH0156.1_Rax/Jaspar

Match Rank:8
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GRCTAATTAAGG--
NNGCGCTAATTAGTGCA

PH0028.1_En1/Jaspar

Match Rank:9
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GRCTAATTAAGG-
GCGAACTAATTAATGC

PH0062.1_Hoxb7/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GRCTAATTAAGG---
GTAGTAATTAATGCAA