| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-211 | -4.876e+02 | 0.0000 | 649.0 | 4.60% | 363.2 | 1.02% | motif file (matrix) |
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| 2 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-200 | -4.613e+02 | 0.0000 | 759.0 | 5.38% | 513.5 | 1.44% | motif file (matrix) |
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| 3 |  | Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer | 1e-105 | -2.421e+02 | 0.0000 | 381.0 | 2.70% | 247.5 | 0.69% | motif file (matrix) |
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| 4 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-83 | -1.926e+02 | 0.0000 | 1587.0 | 11.26% | 2420.1 | 6.78% | motif file (matrix) |
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| 5 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-69 | -1.601e+02 | 0.0000 | 1162.0 | 8.24% | 1698.3 | 4.76% | motif file (matrix) |
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| 6 |  | FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-68 | -1.571e+02 | 0.0000 | 1864.0 | 13.22% | 3129.7 | 8.77% | motif file (matrix) |
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| 7 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-67 | -1.563e+02 | 0.0000 | 1263.0 | 8.96% | 1908.6 | 5.35% | motif file (matrix) |
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| 8 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-58 | -1.355e+02 | 0.0000 | 1405.0 | 9.97% | 2273.2 | 6.37% | motif file (matrix) |
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| 9 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-55 | -1.277e+02 | 0.0000 | 1716.0 | 12.17% | 2956.1 | 8.28% | motif file (matrix) |
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| 10 |  | Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-54 | -1.250e+02 | 0.0000 | 1435.0 | 10.18% | 2380.6 | 6.67% | motif file (matrix) |
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| 11 |  | GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-53 | -1.239e+02 | 0.0000 | 2420.0 | 17.16% | 4506.3 | 12.62% | motif file (matrix) |
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| 12 |  | HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-50 | -1.173e+02 | 0.0000 | 972.0 | 6.89% | 1475.3 | 4.13% | motif file (matrix) |
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| 13 |  | Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-45 | -1.053e+02 | 0.0000 | 2347.0 | 16.65% | 4462.7 | 12.50% | motif file (matrix) |
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| 14 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-37 | -8.644e+01 | 0.0000 | 1334.0 | 9.46% | 2358.0 | 6.60% | motif file (matrix) |
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| 15 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-35 | -8.078e+01 | 0.0000 | 2586.0 | 18.34% | 5185.2 | 14.52% | motif file (matrix) |
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| 16 |  | Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-30 | -6.996e+01 | 0.0000 | 1210.0 | 8.58% | 2184.7 | 6.12% | motif file (matrix) |
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| 17 |  | TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-30 | -6.969e+01 | 0.0000 | 287.0 | 2.04% | 339.2 | 0.95% | motif file (matrix) |
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| 18 |  | Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-28 | -6.660e+01 | 0.0000 | 720.0 | 5.11% | 1172.9 | 3.29% | motif file (matrix) |
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| 19 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-28 | -6.611e+01 | 0.0000 | 977.0 | 6.93% | 1708.9 | 4.79% | motif file (matrix) |
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| 20 |  | Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-27 | -6.368e+01 | 0.0000 | 1700.0 | 12.06% | 3306.2 | 9.26% | motif file (matrix) |
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| 21 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-24 | -5.744e+01 | 0.0000 | 686.0 | 4.87% | 1144.4 | 3.21% | motif file (matrix) |
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| 22 |  | Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-23 | -5.389e+01 | 0.0000 | 440.0 | 3.12% | 665.3 | 1.86% | motif file (matrix) |
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| 23 |  | Sp1(Zf)/Promoter/Homer | 1e-22 | -5.288e+01 | 0.0000 | 507.0 | 3.60% | 801.8 | 2.25% | motif file (matrix) |
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| 24 |  | REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-19 | -4.417e+01 | 0.0000 | 43.0 | 0.30% | 18.0 | 0.05% | motif file (matrix) |
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| 25 |  | c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-15 | -3.592e+01 | 0.0000 | 532.0 | 3.77% | 932.8 | 2.61% | motif file (matrix) |
pdf |
| 26 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-15 | -3.474e+01 | 0.0000 | 2718.0 | 19.28% | 5970.8 | 16.72% | motif file (matrix) |
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| 27 |  | JunD(bZIP)/K562-JunD-ChIP-Seq/Homer | 1e-14 | -3.320e+01 | 0.0000 | 199.0 | 1.41% | 275.6 | 0.77% | motif file (matrix) |
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| 28 |  | Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-13 | -3.157e+01 | 0.0000 | 2015.0 | 14.29% | 4340.4 | 12.16% | motif file (matrix) |
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| 29 |  | PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-12 | -2.916e+01 | 0.0000 | 1486.0 | 10.54% | 3128.6 | 8.76% | motif file (matrix) |
pdf |
| 30 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-12 | -2.810e+01 | 0.0000 | 1300.0 | 9.22% | 2708.4 | 7.59% | motif file (matrix) |
pdf |
| 31 |  | RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-11 | -2.649e+01 | 0.0000 | 1797.0 | 12.75% | 3890.4 | 10.90% | motif file (matrix) |
pdf |
| 32 |  | CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-10 | -2.479e+01 | 0.0000 | 43.0 | 0.30% | 32.7 | 0.09% | motif file (matrix) |
pdf |
| 33 |  | Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-10 | -2.400e+01 | 0.0000 | 3166.0 | 22.46% | 7219.6 | 20.22% | motif file (matrix) |
pdf |
| 34 |  | TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-9 | -2.292e+01 | 0.0000 | 153.0 | 1.09% | 221.3 | 0.62% | motif file (matrix) |
pdf |
| 35 |  | Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-9 | -2.127e+01 | 0.0000 | 289.0 | 2.05% | 501.7 | 1.41% | motif file (matrix) |
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| 36 |  | OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-8 | -1.889e+01 | 0.0000 | 196.0 | 1.39% | 321.9 | 0.90% | motif file (matrix) |
pdf |
| 37 |  | CRE(bZIP)/Promoter/Homer | 1e-7 | -1.735e+01 | 0.0000 | 333.0 | 2.36% | 618.8 | 1.73% | motif file (matrix) |
pdf |
| 38 |  | Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-7 | -1.721e+01 | 0.0000 | 281.0 | 1.99% | 507.4 | 1.42% | motif file (matrix) |
pdf |
| 39 |  | Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-7 | -1.708e+01 | 0.0000 | 188.0 | 1.33% | 313.8 | 0.88% | motif file (matrix) |
pdf |
| 40 |  | Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.645e+01 | 0.0000 | 303.0 | 2.15% | 559.8 | 1.57% | motif file (matrix) |
pdf |
| 41 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.556e+01 | 0.0000 | 326.0 | 2.31% | 615.0 | 1.72% | motif file (matrix) |
pdf |
| 42 |  | Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.424e+01 | 0.0000 | 910.0 | 6.45% | 1963.2 | 5.50% | motif file (matrix) |
pdf |
| 43 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-5 | -1.324e+01 | 0.0000 | 291.0 | 2.06% | 555.0 | 1.55% | motif file (matrix) |
pdf |
| 44 |  | GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-5 | -1.307e+01 | 0.0000 | 221.0 | 1.57% | 404.2 | 1.13% | motif file (matrix) |
pdf |
| 45 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.289e+01 | 0.0000 | 592.0 | 4.20% | 1239.4 | 3.47% | motif file (matrix) |
pdf |
| 46 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.202e+01 | 0.0000 | 784.0 | 5.56% | 1697.3 | 4.75% | motif file (matrix) |
pdf |
| 47 |  | Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-4 | -1.136e+01 | 0.0001 | 533.0 | 3.78% | 1120.4 | 3.14% | motif file (matrix) |
pdf |
| 48 |  | Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.128e+01 | 0.0001 | 3197.0 | 22.68% | 7572.1 | 21.21% | motif file (matrix) |
pdf |
| 49 |  | NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-4 | -1.097e+01 | 0.0001 | 662.0 | 4.70% | 1425.5 | 3.99% | motif file (matrix) |
pdf |
| 50 |  | Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.049e+01 | 0.0001 | 472.0 | 3.35% | 989.0 | 2.77% | motif file (matrix) |
pdf |
| 51 |  | Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-4 | -1.041e+01 | 0.0001 | 1112.0 | 7.89% | 2501.3 | 7.01% | motif file (matrix) |
pdf |
| 52 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.029e+01 | 0.0002 | 455.0 | 3.23% | 952.6 | 2.67% | motif file (matrix) |
pdf |
| 53 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-4 | -9.621e+00 | 0.0003 | 2964.0 | 21.02% | 7043.6 | 19.73% | motif file (matrix) |
pdf |
| 54 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-4 | -9.225e+00 | 0.0004 | 75.0 | 0.53% | 119.6 | 0.34% | motif file (matrix) |
pdf |
| 55 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-3 | -9.108e+00 | 0.0005 | 2319.0 | 16.45% | 5467.8 | 15.32% | motif file (matrix) |
pdf |
| 56 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-3 | -8.833e+00 | 0.0006 | 335.0 | 2.38% | 692.0 | 1.94% | motif file (matrix) |
pdf |
| 57 |  | Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.690e+00 | 0.0007 | 637.0 | 4.52% | 1398.9 | 3.92% | motif file (matrix) |
pdf |
| 58 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.590e+00 | 0.0008 | 926.0 | 6.57% | 2088.3 | 5.85% | motif file (matrix) |
pdf |
| 59 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.364e+00 | 0.0010 | 85.0 | 0.60% | 143.7 | 0.40% | motif file (matrix) |
pdf |
| 60 |  | CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-3 | -8.066e+00 | 0.0013 | 2956.0 | 20.97% | 7071.5 | 19.81% | motif file (matrix) |
pdf |
| 61 |  | GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -7.887e+00 | 0.0015 | 111.0 | 0.79% | 200.2 | 0.56% | motif file (matrix) |
pdf |
| 62 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.880e+00 | 0.0015 | 80.0 | 0.57% | 135.2 | 0.38% | motif file (matrix) |
pdf |
| 63 |  | GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-3 | -7.767e+00 | 0.0017 | 1281.0 | 9.09% | 2962.5 | 8.30% | motif file (matrix) |
pdf |
| 64 |  | Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-3 | -7.703e+00 | 0.0017 | 418.0 | 2.96% | 898.0 | 2.52% | motif file (matrix) |
pdf |
| 65 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-3 | -7.678e+00 | 0.0018 | 796.0 | 5.65% | 1793.3 | 5.02% | motif file (matrix) |
pdf |
| 66 |  | STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer | 1e-3 | -7.661e+00 | 0.0018 | 323.0 | 2.29% | 677.6 | 1.90% | motif file (matrix) |
pdf |
| 67 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -7.655e+00 | 0.0018 | 122.0 | 0.87% | 225.5 | 0.63% | motif file (matrix) |
pdf |
| 68 |  | ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-3 | -7.424e+00 | 0.0022 | 1487.0 | 10.55% | 3472.6 | 9.73% | motif file (matrix) |
pdf |
| 69 |  | ETS(ETS)/Promoter/Homer | 1e-3 | -7.400e+00 | 0.0022 | 456.0 | 3.23% | 990.8 | 2.78% | motif file (matrix) |
pdf |
| 70 |  | GFY(?)/Promoter/Homer | 1e-3 | -7.362e+00 | 0.0022 | 95.0 | 0.67% | 169.9 | 0.48% | motif file (matrix) |
pdf |
| 71 |  | Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-3 | -7.309e+00 | 0.0023 | 1713.0 | 12.15% | 4028.4 | 11.28% | motif file (matrix) |
pdf |
| 72 |  | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-3 | -7.046e+00 | 0.0030 | 719.0 | 5.10% | 1620.2 | 4.54% | motif file (matrix) |
pdf |
| 73 |  | Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-3 | -7.001e+00 | 0.0031 | 1539.0 | 10.92% | 3610.0 | 10.11% | motif file (matrix) |
pdf |
| 74 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-2 | -6.181e+00 | 0.0069 | 297.0 | 2.11% | 634.5 | 1.78% | motif file (matrix) |
pdf |
| 75 |  | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.176e+00 | 0.0069 | 272.0 | 1.93% | 576.3 | 1.61% | motif file (matrix) |
pdf |
| 76 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -6.085e+00 | 0.0074 | 782.0 | 5.55% | 1790.3 | 5.01% | motif file (matrix) |
pdf |
| 77 |  | LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.967e+00 | 0.0082 | 72.0 | 0.51% | 129.0 | 0.36% | motif file (matrix) |
pdf |
| 78 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.656e+00 | 0.0110 | 143.0 | 1.01% | 286.1 | 0.80% | motif file (matrix) |
pdf |
| 79 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.355e+00 | 0.0147 | 1513.0 | 10.73% | 3593.3 | 10.07% | motif file (matrix) |
pdf |
| 80 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.275e+00 | 0.0157 | 130.0 | 0.92% | 260.4 | 0.73% | motif file (matrix) |
pdf |
| 81 |  | USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.172e+00 | 0.0172 | 559.0 | 3.96% | 1271.2 | 3.56% | motif file (matrix) |
pdf |
| 82 |  | NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -5.141e+00 | 0.0176 | 67.0 | 0.48% | 122.6 | 0.34% | motif file (matrix) |
pdf |
| 83 |  | Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.082e+00 | 0.0184 | 594.0 | 4.21% | 1357.3 | 3.80% | motif file (matrix) |
pdf |
| 84 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-2 | -4.985e+00 | 0.0200 | 1882.0 | 13.35% | 4516.6 | 12.65% | motif file (matrix) |
pdf |
| 85 |  | ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -4.970e+00 | 0.0201 | 1944.0 | 13.79% | 4670.6 | 13.08% | motif file (matrix) |
pdf |
| 86 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.918e+00 | 0.0209 | 715.0 | 5.07% | 1654.0 | 4.63% | motif file (matrix) |
pdf |
| 87 |  | EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.848e+00 | 0.0222 | 903.0 | 6.40% | 2112.0 | 5.92% | motif file (matrix) |
pdf |