Information for motif33


Reverse Opposite:

p-value:1e-21
log p-value:-4.968e+01
Information Content per bp:1.927
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.6 +/- 55.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)2.59
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GCATAGGTGTGG-
---TGGGTGTGGC

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCATAGGTGTGG----
GCGGAGGTGTCGCCTC

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCATAGGTGTGG--
--NTGGGTGTGGCC

MA0009.1_T/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCATAGGTGTGG-
--CTAGGTGTGAA

MA0493.1_Klf1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCATAGGTGTGG--
---TGGGTGTGGCN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCATAGGTGTGG----
----NNHTGTGGTTWN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GCATAGGTGTGG---
-----GCTGTGGTTT

MA0103.2_ZEB1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCATAGGTGTGG
---CAGGTGAGG

PB0180.1_Sp4_2/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCATAGGTGTGG----
-CAAAGGCGTGGCCAG

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCATAGGTGTGG
----AGGTGTCA