Information for motif18


Reverse Opposite:

p-value:1e-42
log p-value:-9.861e+01
Information Content per bp:1.910
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets95.0 +/- 51.0bp
Average Position of motif in Background107.7 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TACCATGGTATA
GAACAATGG----

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TACCATGGTATA
AACAAAGG----

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TACCATGGTATA-
NNTNNACAATGGGANNN

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TACCATGGTATA
GGTTGCCATGGCAA-

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TACCATGGTATA
NGTTGCCATGGCAA-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TACCATGGTATA
RACAAWGG----

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TACCATGGTATA
AAAACAATGG----

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TACCATGGTATA--
NNNCCATTGTGTNAN

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TACCATGGTATA-----
TATTATGGGATGGATAA

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TACCATGGTATA
AATGAACAATGGAATT