Information for motif16


Reverse Opposite:

p-value:1e-46
log p-value:-1.073e+02
Information Content per bp:1.963
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets88.6 +/- 40.5bp
Average Position of motif in Background158.5 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------TGTGCTATGGCA
NNNNTTGTGTGCTTNN---

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGTGCTATGGCA---
-TTGCCATGGCAACC

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGTGCTATGGCA---
-TTGCCATGGCAACN

NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGTGCTATGGCA
NNTGTTTATTTTGGCA

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGTGCTATGGCA---
---GGGATTGCATNN

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGTGCTATGGCA
NNCGTTGCTATGGNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCTATGGCA
CTGTTCCTGG---

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGTGCTATGGCA
NNHTGTGGTTWN---

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGTGCTATGGCA--
CGGTTGCCATGGCAAC

MA0150.2_Nfe2l2/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGTGCTATGGCA-----
--TGCTGAGTCATNNTG