Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 404)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 297)	% of Background Sequences with Motif
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-15	-3.628e+01	0.0000	70.0	17.33%	17.9	6.03%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-12	-2.828e+01	0.0000	72.0	17.82%	21.9	7.36%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-10	-2.325e+01	0.0000	79.0	19.55%	27.7	9.30%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-8	-1.997e+01	0.0000	13.0	3.22%	1.3	0.42%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-8	-1.885e+01	0.0000	111.0	27.48%	48.6	16.33%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-8	-1.853e+01	0.0000	56.0	13.86%	18.8	6.34%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-7	-1.760e+01	0.0000	57.0	14.11%	19.3	6.49%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-7	-1.684e+01	0.0000	62.0	15.35%	22.8	7.66%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-7	-1.674e+01	0.0000	19.0	4.70%	3.4	1.13%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-7	-1.674e+01	0.0000	19.0	4.70%	4.0	1.33%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-6	-1.420e+01	0.0000	82.0	20.30%	35.3	11.85%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-6	-1.396e+01	0.0000	30.0	7.43%	8.2	2.75%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-5	-1.334e+01	0.0000	10.0	2.48%	1.3	0.43%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-5	-1.333e+01	0.0000	72.0	17.82%	30.8	10.34%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-5	-1.307e+01	0.0000	135.0	33.42%	69.8	23.47%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-5	-1.266e+01	0.0000	31.0	7.67%	9.7	3.26%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-5	-1.248e+01	0.0001	24.0	5.94%	6.2	2.09%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-5	-1.233e+01	0.0001	37.0	9.16%	12.6	4.23%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-5	-1.233e+01	0.0001	67.0	16.58%	29.0	9.74%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-5	-1.232e+01	0.0001	107.0	26.49%	52.5	17.66%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-5	-1.209e+01	0.0001	77.0	19.06%	34.2	11.50%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-4	-1.136e+01	0.0001	94.0	23.27%	45.3	15.24%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-4	-1.130e+01	0.0001	89.0	22.03%	42.1	14.14%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-4	-1.078e+01	0.0002	43.0	10.64%	16.7	5.62%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-4	-9.832e+00	0.0005	223.0	55.20%	135.2	45.44%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-4	-9.664e+00	0.0006	137.0	33.91%	75.3	25.29%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-4	-9.657e+00	0.0006	162.0	40.10%	92.6	31.14%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-4	-9.369e+00	0.0007	64.0	15.84%	29.6	9.93%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-8.886e+00	0.0012	27.0	6.68%	9.9	3.34%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-8.612e+00	0.0015	115.0	28.47%	62.1	20.88%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-8.570e+00	0.0015	79.0	19.55%	39.6	13.31%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-3	-8.375e+00	0.0018	77.0	19.06%	38.8	13.03%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-8.373e+00	0.0018	96.0	23.76%	50.2	16.88%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-8.169e+00	0.0020	50.0	12.38%	22.8	7.66%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.088e+00	0.0022	55.0	13.61%	25.7	8.64%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-7.931e+00	0.0025	172.0	42.57%	102.9	34.57%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-3	-7.757e+00	0.0028	119.0	29.46%	66.5	22.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-7.719e+00	0.0029	170.0	42.08%	101.8	34.21%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-3	-7.600e+00	0.0032	10.0	2.48%	2.4	0.81%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-3	-7.583e+00	0.0032	7.0	1.73%	1.8	0.59%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-7.552e+00	0.0032	64.0	15.84%	31.6	10.61%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.527e+00	0.0032	91.0	22.52%	48.8	16.42%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.499e+00	0.0032	72.0	17.82%	36.5	12.26%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-3	-7.470e+00	0.0032	139.0	34.41%	80.6	27.11%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-3	-7.418e+00	0.0033	218.0	53.96%	136.7	45.94%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-7.194e+00	0.0040	21.0	5.20%	7.9	2.66%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-7.060e+00	0.0045	79.0	19.55%	41.1	13.80%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-6.739e+00	0.0061	216.0	53.47%	136.7	45.95%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-6.730e+00	0.0061	30.0	7.43%	12.4	4.17%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-6.621e+00	0.0066	37.0	9.16%	16.7	5.62%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.395e+00	0.0081	105.0	25.99%	59.4	19.98%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-6.252e+00	0.0091	9.0	2.23%	2.5	0.82%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-2	-6.140e+00	0.0100	53.0	13.12%	26.2	8.80%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-6.061e+00	0.0106	72.0	17.82%	38.1	12.80%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-5.711e+00	0.0148	32.0	7.92%	14.1	4.74%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.569e+00	0.0168	13.0	3.22%	4.2	1.42%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-2	-5.497e+00	0.0177	17.0	4.21%	6.3	2.13%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-5.285e+00	0.0215	33.0	8.17%	15.3	5.13%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.069e+00	0.0262	216.0	53.47%	140.1	47.10%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.005e+00	0.0275	8.0	1.98%	2.4	0.80%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-4.933e+00	0.0291	188.0	46.53%	120.7	40.58%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-4.905e+00	0.0294	39.0	9.65%	19.3	6.48%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-4.764e+00	0.0333	186.0	46.04%	119.9	40.30%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-4.716e+00	0.0344	109.0	26.98%	65.1	21.89%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-4.714e+00	0.0344	64.0	15.84%	35.1	11.81%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-2	-4.653e+00	0.0355	25.0	6.19%	11.7	3.93%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-4.622e+00	0.0361	129.0	31.93%	79.7	26.78%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.461e+00	0.0418	147.0	36.39%	92.2	30.99%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-4.376e+00	0.0448	5.0	1.24%	1.4	0.46%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-4.348e+00	0.0455	99.0	24.50%	59.6	20.02%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.304e+00	0.0468	112.0	27.72%	68.7	23.08%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-1	-4.300e+00	0.0468	69.0	17.08%	39.3	13.22%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-4.168e+00	0.0522	61.0	15.10%	34.8	11.71%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.981e+00	0.0621	86.0	21.29%	51.7	17.36%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.916e+00	0.0654	191.0	47.28%	125.3	42.12%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.908e+00	0.0654	22.0	5.45%	10.4	3.51%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.761e+00	0.0743	46.0	11.39%	25.6	8.62%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.724e+00	0.0761	30.0	7.43%	15.6	5.25%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.705e+00	0.0766	38.0	9.41%	20.6	6.93%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.469e+00	0.0958	39.0	9.65%	21.0	7.07%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-3.136e+00	0.1320	12.0	2.97%	5.0	1.69%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.050e+00	0.1420	41.0	10.15%	23.5	7.89%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.017e+00	0.1450	187.0	46.29%	125.4	42.15%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-2.892e+00	0.1624	98.0	24.26%	62.4	20.96%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.861e+00	0.1656	115.0	28.47%	74.5	25.03%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.852e+00	0.1656	45.0	11.14%	26.1	8.79%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.851e+00	0.1656	6.0	1.49%	2.9	0.97%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.768e+00	0.1756	116.0	28.71%	75.9	25.50%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-2.766e+00	0.1756	263.0	65.10%	182.2	61.25%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.746e+00	0.1756	158.0	39.11%	105.2	35.37%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.720e+00	0.1780	37.0	9.16%	21.9	7.36%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-2.699e+00	0.1799	90.0	22.28%	57.4	19.28%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.593e+00	0.1978	160.0	39.60%	107.7	36.20%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.531e+00	0.2082	95.0	23.51%	61.4	20.64%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.500e+00	0.2126	92.0	22.77%	59.7	20.07%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.470e+00	0.2167	99.0	24.50%	64.1	21.55%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.437e+00	0.2218	57.0	14.11%	35.3	11.88%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.422e+00	0.2227	120.0	29.70%	79.6	26.77%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.395e+00	0.2265	48.0	11.88%	29.6	9.94%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.381e+00	0.2275	42.0	10.40%	25.1	8.44%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.376e+00	0.2275	19.0	4.70%	10.4	3.48%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.230e+00	0.2593	31.0	7.67%	18.5	6.20%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.162e+00	0.2748	141.0	34.90%	95.6	32.13%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.154e+00	0.2748	192.0	47.52%	133.0	44.69%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-2.149e+00	0.2748	181.0	44.80%	124.7	41.92%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.135e+00	0.2748	7.0	1.73%	3.4	1.14%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.135e+00	0.2748	7.0	1.73%	3.4	1.14%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.070e+00	0.2874	35.0	8.66%	21.7	7.29%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.013e+00	0.3015	154.0	38.12%	105.4	35.43%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.008e+00	0.3015	122.0	30.20%	82.5	27.72%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.006e+00	0.3015	15.0	3.71%	8.2	2.74%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.972e+00	0.3057	112.0	27.72%	75.5	25.39%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.970e+00	0.3057	5.0	1.24%	2.1	0.72%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.944e+00	0.3089	39.0	9.65%	24.9	8.37%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.930e+00	0.3104	85.0	21.04%	57.0	19.15%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.927e+00	0.3104	159.0	39.36%	109.5	36.81%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.911e+00	0.3110	52.0	12.87%	33.7	11.34%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.851e+00	0.3276	86.0	21.29%	57.9	19.46%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.841e+00	0.3280	43.0	10.64%	27.7	9.31%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.818e+00	0.3328	83.0	20.54%	55.8	18.74%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.774e+00	0.3420	87.0	21.53%	58.3	19.60%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.774e+00	0.3420	87.0	21.53%	58.5	19.66%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.743e+00	0.3499	22.0	5.45%	13.8	4.64%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.617e+00	0.3939	11.0	2.72%	7.0	2.35%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.569e+00	0.4099	158.0	39.11%	110.7	37.21%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.497e+00	0.4371	84.0	20.79%	57.3	19.27%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.402e+00	0.4768	89.0	22.03%	61.7	20.73%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.402e+00	0.4768	191.0	47.28%	135.5	45.53%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.399e+00	0.4768	143.0	35.40%	100.2	33.66%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.395e+00	0.4768	15.0	3.71%	9.6	3.24%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.388e+00	0.4768	51.0	12.62%	34.3	11.52%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.375e+00	0.4768	58.0	14.36%	39.7	13.35%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.344e+00	0.4823	38.0	9.41%	25.3	8.49%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.342e+00	0.4823	55.0	13.61%	37.8	12.70%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.269e+00	0.5120	56.0	13.86%	38.4	12.92%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.268e+00	0.5120	209.0	51.73%	149.5	50.24%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.262e+00	0.5120	278.0	68.81%	200.2	67.29%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.239e+00	0.5163	16.0	3.96%	10.6	3.56%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.182e+00	0.5428	196.0	48.51%	140.9	47.34%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.131e+00	0.5669	123.0	30.45%	87.8	29.50%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.077e+00	0.5946	24.0	5.94%	16.1	5.41%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.049e+00	0.6066	63.0	15.59%	44.6	15.00%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.031e+00	0.6136	11.0	2.72%	7.3	2.46%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.027e+00	0.6136	42.0	10.40%	29.5	9.92%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.026e+00	0.6136	28.0	6.93%	19.9	6.68%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.019e+00	0.6136	78.0	19.31%	55.2	18.55%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.016e+00	0.6136	60.0	14.85%	42.4	14.26%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.459e-01	0.6455	29.0	7.18%	20.8	6.98%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-9.299e-01	0.6471	2.0	0.50%	0.4	0.14%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.299e-01	0.6471	2.0	0.50%	0.4	0.13%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-8.602e-01	0.6802	23.0	5.69%	16.5	5.56%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-8.602e-01	0.6802	23.0	5.69%	16.0	5.38%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-8.602e-01	0.6802	23.0	5.69%	16.5	5.56%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.486e-01	0.6837	16.0	3.96%	11.6	3.91%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-8.479e-01	0.6837	34.0	8.42%	24.4	8.22%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.675e-01	0.7320	200.0	49.50%	146.9	49.37%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.417e-01	0.7463	231.0	57.18%	169.7	57.03%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.388e-01	0.7463	21.0	5.20%	15.5	5.20%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.376e-01	0.7463	77.0	19.06%	56.4	18.96%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.302e-01	0.7463	10.0	2.48%	7.5	2.51%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-7.255e-01	0.7463	224.0	55.45%	164.9	55.42%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-7.052e-01	0.7502	14.0	3.47%	10.4	3.51%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.079e-01	0.8217	27.0	6.68%	20.6	6.91%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.690e-01	0.8491	55.0	13.61%	41.3	13.89%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.540e-01	0.8567	170.0	42.08%	126.9	42.66%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.392e-01	0.8643	4.0	0.99%	3.4	1.13%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.143e-01	0.8807	21.0	5.20%	16.1	5.40%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.051e-01	0.8836	88.0	21.78%	66.0	22.18%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.038e-01	0.8836	13.0	3.22%	10.4	3.51%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.836e-01	0.8922	222.0	54.95%	165.7	55.71%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-4.785e-01	0.8922	139.0	34.41%	104.2	35.03%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.702e-01	0.8938	147.0	36.39%	110.3	37.07%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.626e-01	0.8954	18.0	4.46%	14.2	4.77%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.616e-01	0.8954	174.0	43.07%	130.9	44.01%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.396e-01	0.9057	31.0	7.67%	24.7	8.30%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.300e-01	0.9092	91.0	22.52%	69.0	23.19%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.150e-01	0.9178	72.0	17.82%	55.5	18.65%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.133e-01	0.9178	40.0	9.90%	31.3	10.51%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.062e-01	0.9178	15.0	3.71%	12.7	4.26%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.062e-01	0.9178	15.0	3.71%	12.6	4.24%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.926e-01	0.9178	6.0	1.49%	5.2	1.74%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.445e-01	0.9577	7.0	1.73%	6.1	2.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.270e-01	0.9693	72.0	17.82%	56.5	18.98%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.210e-01	0.9699	56.0	13.86%	44.4	14.92%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.146e-01	0.9709	31.0	7.67%	25.4	8.53%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.082e-01	0.9718	167.0	41.34%	127.3	42.80%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.010e-01	0.9736	125.0	30.94%	96.5	32.43%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.957e-01	0.9736	1.0	0.25%	0.0	0.00%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.957e-01	0.9736	1.0	0.25%	1.2	0.41%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.957e-01	0.9736	1.0	0.25%	0.0	0.00%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.921e-01	0.9736	23.0	5.69%	19.0	6.40%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.748e-01	0.9736	173.0	42.82%	132.9	44.66%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.674e-01	0.9756	241.0	59.65%	183.0	61.51%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-2.636e-01	0.9756	42.0	10.40%	34.2	11.48%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.550e-01	0.9775	182.0	45.05%	139.2	46.80%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.533e-01	0.9775	15.0	3.71%	13.9	4.67%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.529e-01	0.9775	136.0	33.66%	105.9	35.59%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.522e-01	0.9775	68.0	16.83%	54.5	18.31%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.314e-01	0.9809	4.0	0.99%	4.7	1.59%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-2.302e-01	0.9809	21.0	5.20%	18.9	6.36%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-2.219e-01	0.9809	11.0	2.72%	10.1	3.38%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.122e-01	0.9850	58.0	14.36%	47.2	15.88%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.120e-01	0.9850	45.0	11.14%	37.4	12.56%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.102e-01	0.9850	5.0	1.24%	5.2	1.76%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.830e-01	0.9994	13.0	3.22%	12.8	4.29%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.826e-01	0.9994	38.0	9.41%	32.8	11.02%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.810e-01	0.9994	98.0	24.26%	78.2	26.27%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.646e-01	1.0000	83.0	20.54%	67.3	22.64%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.595e-01	1.0000	8.0	1.98%	8.8	2.95%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.588e-01	1.0000	96.0	23.76%	77.9	26.20%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.460e-01	1.0000	9.0	2.23%	9.2	3.08%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.415e-01	1.0000	46.0	11.39%	39.3	13.21%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.372e-01	1.0000	37.0	9.16%	32.5	10.92%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.324e-01	1.0000	56.0	13.86%	47.5	15.98%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.301e-01	1.0000	256.0	63.37%	197.0	66.20%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.284e-01	1.0000	288.0	71.29%	219.4	73.74%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.255e-01	1.0000	144.0	35.64%	114.4	38.47%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.106e-01	1.0000	63.0	15.59%	53.0	17.82%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.088e-01	1.0000	40.0	9.90%	35.3	11.86%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.132e-02	1.0000	21.0	5.20%	20.7	6.95%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.203e-02	1.0000	58.0	14.36%	51.0	17.14%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.548e-02	1.0000	86.0	21.29%	72.3	24.29%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.598e-02	1.0000	282.0	69.80%	217.1	72.98%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.560e-02	1.0000	61.0	15.10%	53.7	18.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.428e-02	1.0000	49.0	12.13%	44.1	14.82%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.428e-02	1.0000	49.0	12.13%	44.2	14.85%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-5.100e-02	1.0000	69.0	17.08%	60.3	20.28%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.331e-02	1.0000	24.0	5.94%	24.3	8.17%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.884e-02	1.0000	137.0	33.91%	113.4	38.13%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.862e-02	1.0000	7.0	1.73%	9.3	3.11%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.607e-02	1.0000	142.0	35.15%	117.7	39.57%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.123e-02	1.0000	80.0	19.80%	70.5	23.71%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.074e-02	1.0000	116.0	28.71%	99.2	33.33%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.947e-02	1.0000	121.0	29.95%	103.5	34.78%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.935e-02	1.0000	67.0	16.58%	61.6	20.71%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.911e-02	1.0000	117.0	28.96%	100.9	33.91%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.668e-02	1.0000	1.0	0.25%	3.0	1.02%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.666e-02	1.0000	175.0	43.32%	144.3	48.50%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.560e-02	1.0000	84.0	20.79%	75.7	25.44%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-8.346e-03	1.0000	2.0	0.50%	5.3	1.78%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.560e-03	1.0000	6.0	1.49%	11.0	3.69%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.082e-03	1.0000	38.0	9.41%	40.3	13.55%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.795e-03	1.0000	161.0	39.85%	137.8	46.31%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-9.400e-04	1.0000	297.0	73.51%	237.2	79.74%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.210e-04	1.0000	85.0	21.04%	86.1	28.95%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.18%