Information for motif13


Reverse Opposite:

p-value:1e-96
log p-value:-2.221e+02
Information Content per bp:1.638
Number of Target Sequences with motif1385.0
Percentage of Target Sequences with motif3.22%
Number of Background Sequences with motif744.6
Percentage of Background Sequences with motif1.75%
Average Position of motif in Targets96.1 +/- 53.3bp
Average Position of motif in Background98.7 +/- 61.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0042.1_FOXI1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AACAAATACC-
AAACAAACANNC

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AACAAATACC
AACAAT----

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AACAAATACC--
AGAAGAACAAAGGACTA

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AACAAATACC-
---TAATCCCN

GFY(?)/Promoter/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AACAAATACC
ACTACAATTCCC

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AACAAATACC----
NNNAATTAATCCCCNCN

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AACAAATACC
GTAAACAAT----

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AACAAATACC----
GNNNATTAATCCCTNCN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AACAAATACC
RNAACAATGG--

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AACAAATACC--
ATAAGAACAAAGGACTA