Information for motif18


Reverse Opposite:

p-value:1e-69
log p-value:-1.608e+02
Information Content per bp:1.610
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets79.6 +/- 57.1bp
Average Position of motif in Background177.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAACCCTTT---
NNANTTGACCCCTNNNN

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAACCCTTT---
NTTGTTAATCCCTCTNN

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAACCCTTT
NNNNCTGTTAACNNTNN

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAACCCTTT--
GNNNATTAATCCCTNCN

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGTTAACCCTTT--
AATCGTTAATCCCTTTA

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGTTAACCCTTT
-ATTAACACCT-

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGTTAACCCTTT
CNTGTTTACATA--

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAACCCTTT--
GANNATTAATCCCTNNN

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAACCCTTT---
NTAGTTAATCCCCTTAN

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAACCCTTT--
NNNAATTAATCCCCNCN