Information for motif7


Reverse Opposite:

p-value:1e-229
log p-value:-5.287e+02
Information Content per bp:1.583
Number of Target Sequences with motif3239.0
Percentage of Target Sequences with motif7.52%
Number of Background Sequences with motif1742.3
Percentage of Background Sequences with motif4.08%
Average Position of motif in Targets98.6 +/- 53.3bp
Average Position of motif in Background98.8 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CYMTGKYRAC--
SCCTAGCAACAG

MA0509.1_Rfx1/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CYMTGKYRAC
GTTGCCATGGCAAC

MA0510.1_RFX5/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CYMTGKYRAC---
CTCCCTGGCAACAGC

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CYMTGKYRAC-
TTGCCATGGCAACN

MA0600.1_RFX2/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CYMTGKYRAC-----
GTTGCCATGGCAACCGCGG

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CYMTGKYRAC-
TTGCCATGGCAACC

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CYMTGKYRAC---
TACCATAGCAACGGT

PB0109.1_Bbx_2/Jaspar

Match Rank:8
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CYMTGKYRAC-----
NNNNCTGTTAACNNTNN

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CYMTGKYRAC
KGTTGCCATGGCAAC

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CYMTGKYRAC-------
TGTGACCCTTAGCAACCGATTAA