Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 43070)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 42668)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1554	-3.579e+03	0.0000	7477.0	17.36%	2457.7	5.76%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1470	-3.386e+03	0.0000	6326.0	14.69%	1902.4	4.46%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1256	-2.894e+03	0.0000	5801.0	13.47%	1826.7	4.28%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1015	-2.339e+03	0.0000	6645.0	15.43%	2615.3	6.13%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-774	-1.782e+03	0.0000	2571.0	5.97%	606.2	1.42%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-638	-1.471e+03	0.0000	2987.0	6.93%	928.0	2.17%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-624	-1.438e+03	0.0000	3647.0	8.47%	1314.6	3.08%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-492	-1.133e+03	0.0000	13468.0	31.26%	9142.9	21.43%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-489	-1.128e+03	0.0000	6133.0	14.24%	3215.0	7.53%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-382	-8.812e+02	0.0000	5566.0	12.92%	3062.2	7.18%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-368	-8.487e+02	0.0000	9190.0	21.33%	5984.8	14.03%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-358	-8.246e+02	0.0000	5891.0	13.68%	3376.8	7.91%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-301	-6.948e+02	0.0000	2996.0	6.95%	1407.3	3.30%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-298	-6.873e+02	0.0000	4155.0	9.65%	2235.4	5.24%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-281	-6.474e+02	0.0000	2739.0	6.36%	1274.6	2.99%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-260	-6.004e+02	0.0000	5444.0	12.64%	3332.0	7.81%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-241	-5.566e+02	0.0000	7724.0	17.93%	5273.6	12.36%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-236	-5.455e+02	0.0000	4098.0	9.51%	2363.7	5.54%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-231	-5.337e+02	0.0000	3630.0	8.43%	2025.4	4.75%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-219	-5.052e+02	0.0000	4428.0	10.28%	2673.7	6.27%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-219	-5.048e+02	0.0000	6498.0	15.08%	4345.0	10.18%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-216	-4.992e+02	0.0000	4272.0	9.92%	2560.6	6.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-214	-4.939e+02	0.0000	1167.0	2.71%	396.3	0.93%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-208	-4.792e+02	0.0000	1217.0	2.83%	432.6	1.01%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-193	-4.460e+02	0.0000	13472.0	31.27%	10633.7	24.92%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-191	-4.402e+02	0.0000	7648.0	17.75%	5448.1	12.77%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-167	-3.853e+02	0.0000	1008.0	2.34%	364.3	0.85%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-156	-3.607e+02	0.0000	2050.0	4.76%	1068.4	2.50%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-153	-3.531e+02	0.0000	15648.0	36.33%	12960.7	30.38%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-151	-3.482e+02	0.0000	1592.0	3.70%	761.0	1.78%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-149	-3.443e+02	0.0000	4957.0	11.51%	3373.7	7.91%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-147	-3.397e+02	0.0000	3877.0	9.00%	2497.3	5.85%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-137	-3.161e+02	0.0000	4937.0	11.46%	3414.5	8.00%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-134	-3.103e+02	0.0000	7149.0	16.60%	5327.4	12.49%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-130	-3.010e+02	0.0000	4545.0	10.55%	3118.7	7.31%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-129	-2.987e+02	0.0000	3049.0	7.08%	1905.9	4.47%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-129	-2.981e+02	0.0000	2624.0	6.09%	1574.0	3.69%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-129	-2.971e+02	0.0000	1461.0	3.39%	719.4	1.69%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-128	-2.950e+02	0.0000	7314.0	16.98%	5513.2	12.92%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-127	-2.934e+02	0.0000	1275.0	2.96%	596.9	1.40%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-124	-2.877e+02	0.0000	7966.0	18.49%	6111.4	14.32%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-119	-2.755e+02	0.0000	5915.0	13.73%	4342.1	10.18%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-116	-2.672e+02	0.0000	14560.0	33.80%	12253.9	28.72%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-114	-2.636e+02	0.0000	2059.0	4.78%	1191.7	2.79%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-111	-2.569e+02	0.0000	924.0	2.14%	396.2	0.93%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-109	-2.512e+02	0.0000	8636.0	20.05%	6825.3	16.00%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-105	-2.430e+02	0.0000	1713.0	3.98%	959.6	2.25%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-98	-2.257e+02	0.0000	8030.0	18.64%	6362.7	14.91%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-94	-2.185e+02	0.0000	690.0	1.60%	277.9	0.65%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-93	-2.162e+02	0.0000	623.0	1.45%	238.3	0.56%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-93	-2.142e+02	0.0000	1483.0	3.44%	825.5	1.93%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-92	-2.135e+02	0.0000	2851.0	6.62%	1896.1	4.44%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-89	-2.067e+02	0.0000	6011.0	13.95%	4617.6	10.82%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-80	-1.856e+02	0.0000	3847.0	8.93%	2791.4	6.54%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-69	-1.590e+02	0.0000	641.0	1.49%	290.2	0.68%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-67	-1.547e+02	0.0000	8251.0	19.15%	6830.2	16.01%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-64	-1.486e+02	0.0000	14460.0	33.57%	12704.1	29.77%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-61	-1.413e+02	0.0000	21393.0	49.66%	19488.8	45.68%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-60	-1.382e+02	0.0000	702.0	1.63%	350.0	0.82%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-57	-1.329e+02	0.0000	6106.0	14.17%	4957.7	11.62%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-56	-1.296e+02	0.0000	1465.0	3.40%	935.1	2.19%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-55	-1.267e+02	0.0000	1550.0	3.60%	1008.7	2.36%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-52	-1.215e+02	0.0000	2006.0	4.66%	1391.9	3.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-50	-1.173e+02	0.0000	3617.0	8.40%	2785.5	6.53%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-49	-1.141e+02	0.0000	1951.0	4.53%	1362.0	3.19%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-48	-1.113e+02	0.0000	3323.0	7.71%	2547.0	5.97%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-46	-1.061e+02	0.0000	736.0	1.71%	410.2	0.96%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-44	-1.030e+02	0.0000	479.0	1.11%	231.4	0.54%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-43	-1.008e+02	0.0000	1309.0	3.04%	863.3	2.02%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-42	-9.675e+01	0.0000	4109.0	9.54%	3295.9	7.72%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-39	-9.163e+01	0.0000	1421.0	3.30%	973.3	2.28%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-38	-8.852e+01	0.0000	12998.0	30.17%	11667.9	27.35%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-37	-8.747e+01	0.0000	1923.0	4.46%	1404.7	3.29%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-37	-8.622e+01	0.0000	5086.0	11.81%	4226.3	9.91%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-36	-8.457e+01	0.0000	5818.0	13.51%	4907.5	11.50%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-35	-8.165e+01	0.0000	3560.0	8.26%	2861.5	6.71%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-35	-8.125e+01	0.0000	432.0	1.00%	220.5	0.52%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-34	-8.053e+01	0.0000	6403.0	14.86%	5470.7	12.82%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-33	-7.815e+01	0.0000	2142.0	4.97%	1619.5	3.80%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-33	-7.644e+01	0.0000	1878.0	4.36%	1396.3	3.27%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-33	-7.631e+01	0.0000	895.0	2.08%	577.3	1.35%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-32	-7.526e+01	0.0000	8187.0	19.01%	7172.9	16.81%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-32	-7.443e+01	0.0000	1862.0	4.32%	1388.3	3.25%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-31	-7.336e+01	0.0000	12862.0	29.86%	11646.2	27.29%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-31	-7.215e+01	0.0000	486.0	1.13%	269.4	0.63%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-30	-7.040e+01	0.0000	407.0	0.94%	214.1	0.50%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-29	-6.900e+01	0.0000	263.0	0.61%	117.6	0.28%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-29	-6.860e+01	0.0000	343.0	0.80%	171.2	0.40%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-29	-6.787e+01	0.0000	779.0	1.81%	500.4	1.17%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-29	-6.683e+01	0.0000	1883.0	4.37%	1429.4	3.35%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-28	-6.670e+01	0.0000	5150.0	11.96%	4382.2	10.27%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-28	-6.653e+01	0.0000	2119.0	4.92%	1636.6	3.84%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-28	-6.565e+01	0.0000	1565.0	3.63%	1159.0	2.72%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-27	-6.323e+01	0.0000	525.0	1.22%	310.3	0.73%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-26	-6.123e+01	0.0000	1556.0	3.61%	1163.1	2.73%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-26	-6.012e+01	0.0000	701.0	1.63%	452.7	1.06%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-25	-5.966e+01	0.0000	11102.0	25.77%	10060.5	23.58%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-25	-5.950e+01	0.0000	3729.0	8.66%	3111.6	7.29%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-25	-5.868e+01	0.0000	224.0	0.52%	100.4	0.24%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-25	-5.760e+01	0.0000	6304.0	14.63%	5512.6	12.92%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-23	-5.496e+01	0.0000	2376.0	5.52%	1906.3	4.47%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-23	-5.341e+01	0.0000	144.0	0.33%	54.7	0.13%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-20	-4.688e+01	0.0000	122.0	0.28%	45.3	0.11%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-20	-4.668e+01	0.0000	198.0	0.46%	93.8	0.22%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-19	-4.490e+01	0.0000	1258.0	2.92%	955.2	2.24%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-18	-4.363e+01	0.0000	2380.0	5.52%	1958.3	4.59%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-18	-4.235e+01	0.0000	5747.0	13.34%	5092.4	11.93%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-17	-3.987e+01	0.0000	2615.0	6.07%	2190.1	5.13%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-15	-3.648e+01	0.0000	2094.0	4.86%	1732.8	4.06%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-15	-3.537e+01	0.0000	2441.0	5.67%	2054.3	4.81%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-15	-3.458e+01	0.0000	3641.0	8.45%	3169.6	7.43%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-14	-3.347e+01	0.0000	535.0	1.24%	371.3	0.87%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-14	-3.344e+01	0.0000	7389.0	17.15%	6727.8	15.77%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-14	-3.263e+01	0.0000	5771.0	13.40%	5191.8	12.17%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-14	-3.254e+01	0.0000	4464.0	10.36%	3955.4	9.27%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-14	-3.239e+01	0.0000	7062.0	16.39%	6424.1	15.06%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-13	-3.144e+01	0.0000	658.0	1.53%	479.3	1.12%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-13	-3.083e+01	0.0000	554.0	1.29%	394.0	0.92%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-13	-3.071e+01	0.0000	2818.0	6.54%	2429.0	5.69%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-12	-2.974e+01	0.0000	1861.0	4.32%	1553.0	3.64%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-12	-2.934e+01	0.0000	3144.0	7.30%	2740.6	6.42%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-12	-2.889e+01	0.0000	1298.0	3.01%	1048.5	2.46%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-12	-2.878e+01	0.0000	1091.0	2.53%	864.7	2.03%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-12	-2.862e+01	0.0000	2155.0	5.00%	1828.3	4.28%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-12	-2.851e+01	0.0000	971.0	2.25%	759.2	1.78%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-12	-2.820e+01	0.0000	8366.0	19.42%	7718.2	18.09%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-12	-2.814e+01	0.0000	2041.0	4.74%	1726.4	4.05%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-11	-2.560e+01	0.0000	858.0	1.99%	670.8	1.57%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-11	-2.554e+01	0.0000	2619.0	6.08%	2276.5	5.34%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-11	-2.543e+01	0.0000	6117.0	14.20%	5587.5	13.10%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-10	-2.508e+01	0.0000	211.0	0.49%	127.3	0.30%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-10	-2.437e+01	0.0000	4790.0	11.12%	4331.1	10.15%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-10	-2.376e+01	0.0000	2816.0	6.54%	2472.6	5.79%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-10	-2.308e+01	0.0000	490.0	1.14%	359.6	0.84%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-9	-2.245e+01	0.0000	1409.0	3.27%	1178.9	2.76%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-9	-2.201e+01	0.0000	7116.0	16.52%	6584.0	15.43%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-9	-2.175e+01	0.0000	3792.0	8.80%	3407.5	7.99%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-9	-2.172e+01	0.0000	337.0	0.78%	234.3	0.55%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-9	-2.116e+01	0.0000	874.0	2.03%	701.9	1.65%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-8	-2.070e+01	0.0000	901.0	2.09%	727.1	1.70%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-8	-1.991e+01	0.0000	520.0	1.21%	394.2	0.92%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-1.960e+01	0.0000	4420.0	10.26%	4024.6	9.43%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-8	-1.951e+01	0.0000	170.0	0.39%	104.4	0.24%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-7	-1.835e+01	0.0000	1183.0	2.75%	993.6	2.33%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-7	-1.769e+01	0.0000	5018.0	11.65%	4616.7	10.82%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-7	-1.765e+01	0.0000	2134.0	4.95%	1878.2	4.40%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-7	-1.745e+01	0.0000	1077.0	2.50%	901.9	2.11%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-7	-1.735e+01	0.0000	51.0	0.12%	21.0	0.05%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-7	-1.712e+01	0.0000	466.0	1.08%	356.1	0.83%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-7	-1.687e+01	0.0000	4755.0	11.04%	4373.4	10.25%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-7	-1.665e+01	0.0000	602.0	1.40%	477.5	1.12%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-6	-1.605e+01	0.0000	736.0	1.71%	599.7	1.41%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-6	-1.586e+01	0.0000	8355.0	19.40%	7862.5	18.43%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-6	-1.569e+01	0.0000	6130.0	14.23%	5710.6	13.38%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-6	-1.531e+01	0.0000	3985.0	9.25%	3653.0	8.56%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-6	-1.442e+01	0.0000	2455.0	5.70%	2206.6	5.17%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-5	-1.379e+01	0.0000	3914.0	9.09%	3602.1	8.44%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-5	-1.369e+01	0.0000	161.0	0.37%	107.3	0.25%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-5	-1.307e+01	0.0000	433.0	1.01%	341.1	0.80%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-5	-1.299e+01	0.0000	2379.0	5.52%	2147.3	5.03%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.251e+01	0.0000	1463.0	3.40%	1288.4	3.02%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-5	-1.194e+01	0.0000	1942.0	4.51%	1744.0	4.09%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-5	-1.186e+01	0.0000	201.0	0.47%	144.8	0.34%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-1.149e+01	0.0000	170.0	0.39%	119.3	0.28%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-4	-1.145e+01	0.0000	2560.0	5.94%	2334.4	5.47%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-4	-1.140e+01	0.0000	741.0	1.72%	626.6	1.47%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-4	-9.865e+00	0.0001	163.0	0.38%	117.7	0.28%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-4	-9.579e+00	0.0001	37.0	0.09%	19.0	0.04%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-4	-9.459e+00	0.0001	1364.0	3.17%	1219.8	2.86%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-8.756e+00	0.0002	486.0	1.13%	407.1	0.95%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-3	-8.713e+00	0.0002	221.0	0.51%	170.4	0.40%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-8.544e+00	0.0003	180.0	0.42%	135.9	0.32%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-8.325e+00	0.0003	1183.0	2.75%	1059.0	2.48%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-8.278e+00	0.0004	1541.0	3.58%	1397.8	3.28%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-8.011e+00	0.0005	570.0	1.32%	488.9	1.15%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-7.705e+00	0.0006	1700.0	3.95%	1554.1	3.64%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-3	-7.254e+00	0.0010	204.0	0.47%	160.4	0.38%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-7.187e+00	0.0010	430.0	1.00%	364.1	0.85%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-3	-7.127e+00	0.0011	2941.0	6.83%	2752.4	6.45%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-3	-7.021e+00	0.0012	478.0	1.11%	409.4	0.96%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-6.906e+00	0.0014	5607.0	13.02%	5342.7	12.52%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-6.902e+00	0.0014	10991.0	25.51%	10611.4	24.87%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-6.640e+00	0.0018	742.0	1.72%	657.6	1.54%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-6.612e+00	0.0018	1057.0	2.45%	954.9	2.24%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-6.559e+00	0.0019	956.0	2.22%	859.7	2.01%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-2	-6.478e+00	0.0020	152.0	0.35%	117.6	0.28%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-6.432e+00	0.0021	1897.0	4.40%	1758.0	4.12%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-6.149e+00	0.0028	4926.0	11.44%	4694.3	11.00%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-6.099e+00	0.0029	3307.0	7.68%	3122.4	7.32%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-5.112e+00	0.0078	1395.0	3.24%	1292.9	3.03%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-4.912e+00	0.0095	340.0	0.79%	294.3	0.69%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.977e+00	0.0240	7180.0	16.67%	6953.1	16.30%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.858e+00	0.0269	7665.0	17.79%	7433.5	17.42%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.640e+00	0.0333	1734.0	4.03%	1640.4	3.84%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.367e+00	0.0435	459.0	1.07%	417.5	0.98%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.361e+00	0.0435	1728.0	4.01%	1639.8	3.84%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.328e+00	0.0448	169.0	0.39%	145.7	0.34%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.213e+00	0.0500	1516.0	3.52%	1437.0	3.37%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-2.885e+00	0.0690	587.0	1.36%	544.9	1.28%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.371e+00	0.1149	485.0	1.13%	453.0	1.06%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.200e+00	0.1355	1492.0	3.46%	1432.1	3.36%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-2.113e+00	0.1472	26.0	0.06%	20.3	0.05%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.942e+00	0.1737	1395.0	3.24%	1343.6	3.15%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.924e+00	0.1760	9098.0	21.12%	8923.6	20.91%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.922e+00	0.1760	1734.0	4.03%	1675.3	3.93%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.855e+00	0.1868	247.0	0.57%	229.3	0.54%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.670e+00	0.2236	54.0	0.13%	47.1	0.11%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.567e+00	0.2468	1202.0	2.79%	1163.4	2.73%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.472e+00	0.2701	1069.0	2.48%	1035.3	2.43%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.434e+00	0.2780	230.0	0.53%	217.3	0.51%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.434e+00	0.2780	230.0	0.53%	217.3	0.51%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.304e+00	0.3149	765.0	1.78%	741.3	1.74%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.230e+00	0.3377	800.0	1.86%	777.5	1.82%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.194e+00	0.3483	1378.0	3.20%	1346.6	3.16%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.093e+00	0.3834	6902.0	16.02%	6804.2	15.95%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.077e+00	0.3880	7182.0	16.67%	7082.8	16.60%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.032e+00	0.4039	329.0	0.76%	320.0	0.75%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-9.660e-01	0.4295	1349.0	3.13%	1325.9	3.11%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.873e-01	0.5649	10979.0	25.49%	10875.3	25.49%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.674e-01	0.5737	344.0	0.80%	341.2	0.80%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-4.462e-01	0.7125	326.0	0.76%	329.5	0.77%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.447e-01	0.7850	2124.0	4.93%	2128.0	4.99%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.412e-01	0.7850	1657.0	3.85%	1663.2	3.90%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.984e-01	0.8149	1514.0	3.51%	1524.0	3.57%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.971e-01	0.8149	421.0	0.98%	430.8	1.01%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.876e-01	0.8164	837.0	1.94%	848.3	1.99%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.646e-01	0.8317	1629.0	3.78%	1642.3	3.85%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.450e-01	0.8445	113.0	0.26%	120.6	0.28%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.310e-01	0.9423	6891.0	16.00%	6913.1	16.20%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.539e-02	1.0000	613.0	1.42%	661.2	1.55%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.215e-02	1.0000	338.0	0.78%	377.2	0.88%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.106e-03	1.0000	67.0	0.16%	87.8	0.21%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.539e-03	1.0000	581.0	1.35%	636.8	1.49%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.099e-03	1.0000	4990.0	11.58%	5113.8	11.98%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.908e-03	1.0000	1795.0	4.17%	1899.9	4.45%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.652e-03	1.0000	2082.0	4.83%	2194.0	5.14%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.630e-03	1.0000	6651.0	15.44%	6808.3	15.96%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.010e-04	1.0000	718.0	1.67%	808.5	1.89%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.000e-06	1.0000	591.0	1.37%	700.1	1.64%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.000e-06	1.0000	72.0	0.17%	119.5	0.28%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	407.0	0.94%	514.5	1.21%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	931.0	2.16%	1086.4	2.55%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	14959.0	34.73%	15424.2	36.15%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1706.0	3.96%	1973.8	4.63%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	2275.0	5.28%	2651.0	6.21%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	0.000e+00	1.0000	389.0	0.90%	578.0	1.35%