Information for motif1


Reverse Opposite:

p-value:1e-1465
log p-value:-3.374e+03
Information Content per bp:1.611
Number of Target Sequences with motif8127.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif2913.0
Percentage of Background Sequences with motif5.71%
Average Position of motif in Targets99.7 +/- 51.7bp
Average Position of motif in Background100.1 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.95
Offset:-3
Orientation:forward strand
Alignment:---NCWRWGYAAACA--
NNNVCTGWGYAAACASN

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.95
Offset:2
Orientation:forward strand
Alignment:NCWRWGYAAACA
--AAAGTAAACA

MA0148.3_FOXA1/Jaspar

Match Rank:3
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:NCWRWGYAAACA----
-CAAAGTAAACANNNN

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.94
Offset:2
Orientation:forward strand
Alignment:NCWRWGYAAACA
--AAAGTAAACA

MA0047.2_Foxa2/Jaspar

Match Rank:5
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:NCWRWGYAAACA
NCTAAGTAAACA

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:NCWRWGYAAACA--
--TATGTAAACANG

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.91
Offset:3
Orientation:reverse strand
Alignment:NCWRWGYAAACA
---AAATAAACA

MA0593.1_FOXP2/Jaspar

Match Rank:8
Score:0.90
Offset:3
Orientation:forward strand
Alignment:NCWRWGYAAACA--
---AAGTAAACAAA

MA0157.1_FOXO3/Jaspar

Match Rank:9
Score:0.88
Offset:4
Orientation:forward strand
Alignment:NCWRWGYAAACA
----TGTAAACA

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:10
Score:0.88
Offset:3
Orientation:reverse strand
Alignment:NCWRWGYAAACA---
---NDGTAAACARRN