Information for motif10


Reverse Opposite:

p-value:1e-175
log p-value:-4.036e+02
Information Content per bp:1.447
Number of Target Sequences with motif29521.0
Percentage of Target Sequences with motif57.34%
Number of Background Sequences with motif26094.1
Percentage of Background Sequences with motif51.13%
Average Position of motif in Targets99.4 +/- 55.0bp
Average Position of motif in Background100.5 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:NAGCGGGATTAN-----
-AGGGGGATTAGCTGCC

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:NAGCGGGATTAN
---NGGGATTA-

PH0122.1_Obox2/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-NAGCGGGATTAN----
TGAGGGGGATTAACTAT

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-NAGCGGGATTAN----
TTAGAGGGATTAACAAT

PH0123.1_Obox3/Jaspar

Match Rank:5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-NAGCGGGATTAN----
TGAGGGGGATTAACTAT

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-NAGCGGGATTAN-
TTGCCCGGATTAGG

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-NAGCGGGATTAN----
TTAAGGGGATTAACTAC

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:forward strand
Alignment:NAGCGGGATTAN-----
TAGAGGGATTAAATTTC

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:NAGCGGGATTAN-
-----GGATTAGC

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:NAGCGGGATTAN-----
NANAGGGATTAATTATN