Information for motif19


Reverse Opposite:

p-value:1e-63
log p-value:-1.451e+02
Information Content per bp:1.508
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets155.9 +/- 45.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:ACGACGCACGTT-
-----GCACGTNC

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:forward strand
Alignment:ACGACGCACGTT---
-----GCACGTACCC

MA0004.1_Arnt/Jaspar

Match Rank:3
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:ACGACGCACGTT
------CACGTG

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ACGACGCACGTT
----BGCACGTA

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ACGACGCACGTT-
---NGKCACGTGM

MA0464.1_Bhlhe40/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:ACGACGCACGTT--
---NTGCACGTGAG

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:ACGACGCACGTT--
------CACGTGNC

c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ACGACGCACGTT-
---NNCCACGTGG

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:ACGACGCACGTT--
------CACGTGDC

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:ACGACGCACGTT
----NCCACGTG