Information for motif3


Reverse Opposite:

p-value:1e-720
log p-value:-1.659e+03
Information Content per bp:1.540
Number of Target Sequences with motif15601.0
Percentage of Target Sequences with motif30.30%
Number of Background Sequences with motif10029.4
Percentage of Background Sequences with motif19.65%
Average Position of motif in Targets100.6 +/- 54.2bp
Average Position of motif in Background96.5 +/- 62.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:BTGATTRGCY
YTAATTAVHT

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.83
Offset:1
Orientation:forward strand
Alignment:BTGATTRGCY
-TAATTAGN-

PH0127.1_Nobox/Jaspar

Match Rank:3
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----BTGATTRGCY--
GNTNNCTAATTAGNNCG

PH0133.1_Pax7/Jaspar

Match Rank:4
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----BTGATTRGCY--
NNNTNCTAATTAGNTCN

MA0132.1_Pdx1/Jaspar

Match Rank:5
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:BTGATTRGCY
--AATTAG--

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:BTGATTRGCY
CCGATTGGCT

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:BTGATTRGCY
-YCATTAMC-

MA0502.1_NFYB/Jaspar

Match Rank:8
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:BTGATTRGCY-----
CTGATTGGTCNATTT

PH0024.1_Dlx5/Jaspar

Match Rank:9
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---BTGATTRGCY---
GGGGTAATTAGCTCTG

PH0074.1_Hoxd1/Jaspar

Match Rank:10
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----BTGATTRGCY---
TAAACTAATTAGCTGTA