Information for motif12


Reverse Opposite:

p-value:1e-43
log p-value:-9.902e+01
Information Content per bp:1.913
Number of Target Sequences with motif856.0
Percentage of Target Sequences with motif4.78%
Number of Background Sequences with motif918.2
Percentage of Background Sequences with motif2.89%
Average Position of motif in Targets84.2 +/- 61.2bp
Average Position of motif in Background48.0 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0138.1_Pitx2/Jaspar

Match Rank:1
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCST----
GNNNATTAATCCCTNCN

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.81
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCST----
GANNATTAATCCCTNNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-TTAATCST
GCTAATCC-

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCST----
NNNAATTAATCCCCNCN

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCST-----
NTTGTTAATCCCTCTNN

PH0125.1_Obox5_2/Jaspar

Match Rank:6
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----TTAATCST----
GATAATTAATCCCTCTT

PH0025.1_Dmbx1/Jaspar

Match Rank:7
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCST-----
NNNATTAATCCGNTTNA

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCST----
NANANTTAATCCCNNNN

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----TTAATCST----
AATCGTTAATCCCTTTA

MA0151.1_ARID3A/Jaspar

Match Rank:10
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TTAATCST
TTTAAT---