Information for motif20


Reverse Opposite:

p-value:1e-12
log p-value:-2.982e+01
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets116.7 +/- 49.6bp
Average Position of motif in Background61.9 +/- 49.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCTGCACTAA-
--NCCACTTAN

PB0096.1_Zfp187_1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCTGCACTAA---
TTATGTACTAATAA

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCACTAA
NGCTN------

PB0197.1_Zfp105_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCTGCACTAA-----
ATGGTTCAATAATTTTG

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GCTGCACTAA-
AATCGCACTGCATTCCG

MA0522.1_Tcf3/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCTGCACTAA
CACAGCTGCAG---

PH0110.1_Nkx1-2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCTGCACTAA---------
--TGNACTAATTAGTGNAN

PH0039.1_Mnx1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTGCACTAA-------
-NNNCACTAATTANTNN

MA0158.1_HOXA5/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GCTGCACTAA--
----CACTAATT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCTGCACTAA-
-AAGCACTTAA