Information for motif21


Reverse Opposite:

p-value:1e-11
log p-value:-2.716e+01
Information Content per bp:1.982
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets112.5 +/- 55.7bp
Average Position of motif in Background70.9 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CTTGGTTCAA--
TNNTCCTTTGTTCTNNT

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CTTGGTTCAA--
NNNTCCTTTGTTCTNNN

PB0197.1_Zfp105_2/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTTGGTTCAA--------
-ATGGTTCAATAATTTTG

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTTGGTTCAA----
CTCCAGGGGTCAATTGA

MA0099.2_JUN::FOS/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTTGGTTCAA
--TGAGTCA-

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTTGGTTCAA---
AGAGCGGGGTCAAGTA

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTTGGTTCAA
NCCATTGTTC--

MA0514.1_Sox3/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTTGGTTCAA
CCTTTGTTTT-

MA0143.3_Sox2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTTGGTTCAA
CCTTTGTT---

PB0081.1_Tcf1_1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGTTCAA-----
NNNTTAGTTAACTNANN