Information for motif24


Reverse Opposite:

p-value:1e-9
log p-value:-2.088e+01
Information Content per bp:1.878
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif12.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets88.9 +/- 51.0bp
Average Position of motif in Background130.4 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:AGCGAATTTC-
-GGGAATTTCC

MA0107.1_RELA/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGCGAATTTC-
-GGGAATTTCC

PH0024.1_Dlx5/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGCGAATTTC---
NANNGNTAATTACCNN

MA0105.3_NFKB1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGCGAATTTC--
-GGGAATTTCCC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGCGAATTTC--
NGGGGATTTCCC

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGCGAATTTC-
-GGGGATTTCC

PH0045.1_Hoxa1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCGAATTTC---
CTGAGCTAATTACCGT

PH0009.1_Bsx/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGCGAATTTC---
NTNAGNTAATTACCTN

PH0074.1_Hoxd1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGCGAATTTC----
NNNAGCTAATTAGCTTA

MA0101.1_REL/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGCGAATTTC-
-GGGGATTTCC