Information for motif26


Reverse Opposite:

p-value:1e-5
log p-value:-1.213e+01
Information Content per bp:1.530
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets88.1 +/- 57.8bp
Average Position of motif in Background93.1 +/- 49.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TAACAACCCT
--ACAACAC-

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TAACAACCCT
AAAAATAACAAACGG

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TAACAACCCT
TACCATAGCAACGGT

PB0120.1_Foxj1_2/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------TAACAACCCT
ATGTCACAACAACAC-

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.61
Offset:-9
Orientation:forward strand
Alignment:---------TAACAACCCT----
TGTGACCCTTAGCAACCGATTAA

MA0087.1_Sox5/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TAACAACCCT
NAACAAT---

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TAACAACCCT
GTAAACAAT---

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TAACAACCCT
CCGCATAGCAACGGA

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TAACAACCCT
-AACAAT---

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TAACAACCCT-
CAAACAACAACACCT