Information for motif3


Reverse Opposite:

p-value:1e-212
log p-value:-4.899e+02
Information Content per bp:1.611
Number of Target Sequences with motif3528.0
Percentage of Target Sequences with motif19.70%
Number of Background Sequences with motif3687.5
Percentage of Background Sequences with motif11.61%
Average Position of motif in Targets99.5 +/- 54.2bp
Average Position of motif in Background100.8 +/- 59.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:forward strand
Alignment:TCHCAGCAGG---
-CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TCHCAGCAGG---
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TCHCAGCAGG---
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--TCHCAGCAGG---
GAGCACAGCAGGACA

MA0461.1_Atoh1/Jaspar

Match Rank:5
Score:0.76
Offset:3
Orientation:forward strand
Alignment:TCHCAGCAGG-
---CAGATGGC

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TCHCAGCAGG
NAHCAGCTGD

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCHCAGCAGG
-ANCAGCTG-

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TCHCAGCAGG
-CACAGN---

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TCHCAGCAGG--
--NCAGCTGCTG

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCHCAGCAGG
-AACAGCTG-