Information for motif4


Reverse Opposite:

p-value:1e-196
log p-value:-4.521e+02
Information Content per bp:1.655
Number of Target Sequences with motif3686.0
Percentage of Target Sequences with motif20.58%
Number of Background Sequences with motif4000.8
Percentage of Background Sequences with motif12.59%
Average Position of motif in Targets100.1 +/- 54.2bp
Average Position of motif in Background100.4 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:NTTMACACCT
ATTAACACCT

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:NTTMACACCT
KTTCACACCT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:NTTMACACCT
--TGACACCT

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---NTTMACACCT----
NNTTTTCACACCTTNNN

MA0009.1_T/Jaspar

Match Rank:5
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:NTTMACACCT--
-TTCACACCTAG

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--NTTMACACCT----
GTATTGACAGCTNNTT

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---NTTMACACCT----
TCNNTTTACAGCGNNNT

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---NTTMACACCT----
TCNCTTTACAGCGNNNT

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---NTTMACACCT----
ATAAATGACACCTATCA

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--NTTMACACCT----
NTATTGACAGCTNNTT