Information for motif5


Reverse Opposite:

p-value:1e-193
log p-value:-4.458e+02
Information Content per bp:1.599
Number of Target Sequences with motif3694.0
Percentage of Target Sequences with motif20.63%
Number of Background Sequences with motif4027.4
Percentage of Background Sequences with motif12.68%
Average Position of motif in Targets101.9 +/- 53.8bp
Average Position of motif in Background99.5 +/- 62.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:CTAATTAGCH
YTAATTAVHT

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.94
Offset:1
Orientation:forward strand
Alignment:CTAATTAGCH
-TAATTAGN-

PB0031.1_Hoxa3_1/Jaspar

Match Rank:3
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCH---
GTTAATTANCTCNN

PH0131.1_Pax4/Jaspar

Match Rank:4
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCH---
TGAACTAATTAGCCCAC

PH0050.1_Hoxa3/Jaspar

Match Rank:5
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCH---
ACTAATTANCNCNA

PH0074.1_Hoxd1/Jaspar

Match Rank:6
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCH---
TAAACTAATTAGCTGTA

PH0155.1_Prrx2/Jaspar

Match Rank:7
Score:0.91
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGCH--
NTTCGCTAATTAGCTNT

PH0133.1_Pax7/Jaspar

Match Rank:8
Score:0.90
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGCH--
NNNTNCTAATTAGNTCN

PH0001.1_Alx3/Jaspar

Match Rank:9
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCH---
TAAACTAATTAGCTGAG

PH0160.1_Shox2/Jaspar

Match Rank:10
Score:0.90
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGCH--
NNNAATTAATTAANNNG