Information for motif7


Reverse Opposite:

p-value:1e-78
log p-value:-1.814e+02
Information Content per bp:1.453
Number of Target Sequences with motif1312.0
Percentage of Target Sequences with motif7.33%
Number of Background Sequences with motif1338.9
Percentage of Background Sequences with motif4.21%
Average Position of motif in Targets101.6 +/- 54.9bp
Average Position of motif in Background97.9 +/- 55.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----AGGTGDCRCY--
GCGGAGGTGTCGCCTC

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGGTGDCRCY
AGGTGTCA--

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AGGTGDCRCY
NNCAGGTGNN---

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGTGDCRCY
AGGTGTGAAM

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGTGDCRCY-----
AGATGCTRCTRCCHT

MA0139.1_CTCF/Jaspar

Match Rank:6
Score:0.63
Offset:-8
Orientation:forward strand
Alignment:--------AGGTGDCRCY-
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------AGGTGDCRCY--
TGGCCACCAGGTGGCACTNT

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------AGGTGDCRCY----
GCCASCAGGGGGCGCYVNNG

MA0103.2_ZEB1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGDCRCY
CAGGTGAGG--

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGTGDCRCY
AGGTGTTAAT