Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 17912)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 31617)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-768	-1.770e+03	0.0000	1467.0	8.19%	338.3	1.07%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-683	-1.575e+03	0.0000	1674.0	9.35%	528.5	1.66%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-676	-1.557e+03	0.0000	4001.0	22.34%	2734.4	8.61%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-658	-1.516e+03	0.0000	3406.0	19.02%	2118.6	6.67%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-548	-1.263e+03	0.0000	3046.0	17.01%	1966.1	6.19%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-390	-8.989e+02	0.0000	3540.0	19.77%	2973.7	9.36%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-275	-6.335e+02	0.0000	1538.0	8.59%	969.4	3.05%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-231	-5.333e+02	0.0000	2400.0	13.40%	2094.3	6.59%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-189	-4.356e+02	0.0000	4662.0	26.03%	5483.8	17.26%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-172	-3.979e+02	0.0000	4944.0	27.61%	6027.8	18.97%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-150	-3.454e+02	0.0000	2439.0	13.62%	2499.8	7.87%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-142	-3.276e+02	0.0000	3442.0	19.22%	3975.4	12.51%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-133	-3.078e+02	0.0000	2361.0	13.18%	2478.6	7.80%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-132	-3.048e+02	0.0000	1688.0	9.43%	1580.9	4.98%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-125	-2.884e+02	0.0000	3172.0	17.71%	3692.5	11.62%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-120	-2.784e+02	0.0000	1532.0	8.56%	1428.9	4.50%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-108	-2.501e+02	0.0000	7416.0	41.41%	10629.4	33.46%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-105	-2.422e+02	0.0000	4780.0	26.69%	6331.4	19.93%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-100	-2.319e+02	0.0000	2519.0	14.07%	2904.8	9.14%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-91	-2.111e+02	0.0000	3759.0	20.99%	4850.9	15.27%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-79	-1.839e+02	0.0000	2040.0	11.39%	2353.2	7.41%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-76	-1.767e+02	0.0000	3261.0	18.21%	4216.7	13.27%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-72	-1.668e+02	0.0000	7914.0	44.20%	11943.1	37.59%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-68	-1.577e+02	0.0000	4684.0	26.16%	6572.9	20.69%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-64	-1.489e+02	0.0000	881.0	4.92%	838.3	2.64%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-58	-1.343e+02	0.0000	6123.0	34.19%	9097.9	28.64%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-57	-1.319e+02	0.0000	9804.0	54.75%	15493.2	48.77%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-54	-1.259e+02	0.0000	3996.0	22.32%	5627.3	17.71%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-50	-1.173e+02	0.0000	3727.0	20.81%	5240.1	16.49%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-49	-1.141e+02	0.0000	1018.0	5.68%	1102.5	3.47%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-45	-1.052e+02	0.0000	635.0	3.55%	608.6	1.92%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-42	-9.671e+01	0.0000	81.0	0.45%	19.8	0.06%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-41	-9.670e+01	0.0000	2631.0	14.69%	3599.3	11.33%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-38	-8.833e+01	0.0000	3391.0	18.94%	4868.8	15.33%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-37	-8.536e+01	0.0000	616.0	3.44%	626.8	1.97%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-36	-8.499e+01	0.0000	494.0	2.76%	467.9	1.47%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-36	-8.458e+01	0.0000	2989.0	16.69%	4241.0	13.35%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-36	-8.428e+01	0.0000	7552.0	42.17%	11925.8	37.54%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-32	-7.549e+01	0.0000	2950.0	16.47%	4234.7	13.33%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-32	-7.545e+01	0.0000	1907.0	10.65%	2571.7	8.09%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-32	-7.457e+01	0.0000	287.0	1.60%	231.0	0.73%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-31	-7.192e+01	0.0000	276.0	1.54%	221.6	0.70%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-29	-6.698e+01	0.0000	1622.0	9.06%	2170.8	6.83%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-28	-6.473e+01	0.0000	83.0	0.46%	32.4	0.10%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-27	-6.337e+01	0.0000	1210.0	6.76%	1554.6	4.89%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-25	-5.933e+01	0.0000	307.0	1.71%	279.4	0.88%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-25	-5.793e+01	0.0000	1043.0	5.82%	1325.8	4.17%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-24	-5.685e+01	0.0000	807.0	4.51%	978.5	3.08%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-24	-5.615e+01	0.0000	3186.0	17.79%	4759.8	14.98%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-24	-5.592e+01	0.0000	602.0	3.36%	685.7	2.16%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-23	-5.431e+01	0.0000	2471.0	13.80%	3600.9	11.33%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-22	-5.266e+01	0.0000	2585.0	14.44%	3798.3	11.96%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-21	-4.895e+01	0.0000	312.0	1.74%	306.0	0.96%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-18	-4.161e+01	0.0000	225.0	1.26%	209.0	0.66%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-17	-4.106e+01	0.0000	3863.0	21.57%	6028.3	18.98%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-17	-4.074e+01	0.0000	1730.0	9.66%	2496.6	7.86%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-16	-3.799e+01	0.0000	494.0	2.76%	589.2	1.85%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-16	-3.749e+01	0.0000	711.0	3.97%	913.4	2.88%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-15	-3.595e+01	0.0000	2402.0	13.41%	3633.5	11.44%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-15	-3.543e+01	0.0000	120.0	0.67%	92.7	0.29%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-14	-3.242e+01	0.0000	3258.0	18.19%	5099.3	16.05%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-13	-3.014e+01	0.0000	256.0	1.43%	276.6	0.87%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-12	-2.977e+01	0.0000	1212.0	6.77%	1740.9	5.48%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-12	-2.973e+01	0.0000	460.0	2.57%	570.9	1.80%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-12	-2.857e+01	0.0000	2782.0	15.54%	4340.1	13.66%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-12	-2.854e+01	0.0000	1713.0	9.57%	2563.2	8.07%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-11	-2.751e+01	0.0000	496.0	2.77%	633.4	1.99%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-11	-2.692e+01	0.0000	530.0	2.96%	687.4	2.16%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-11	-2.674e+01	0.0000	2815.0	15.72%	4417.0	13.90%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-11	-2.593e+01	0.0000	184.0	1.03%	189.6	0.60%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-11	-2.577e+01	0.0000	57.0	0.32%	35.7	0.11%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-10	-2.500e+01	0.0000	952.0	5.32%	1357.4	4.27%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-10	-2.500e+01	0.0000	1032.0	5.76%	1485.7	4.68%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-10	-2.449e+01	0.0000	116.0	0.65%	104.9	0.33%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-10	-2.358e+01	0.0000	125.0	0.70%	117.8	0.37%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-9	-2.265e+01	0.0000	1043.0	5.82%	1520.8	4.79%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-9	-2.152e+01	0.0000	400.0	2.23%	515.1	1.62%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-9	-2.102e+01	0.0000	2004.0	11.19%	3119.5	9.82%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-8	-2.055e+01	0.0000	2135.0	11.92%	3345.0	10.53%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-8	-2.012e+01	0.0000	502.0	2.80%	678.8	2.14%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-8	-1.996e+01	0.0000	2713.0	15.15%	4327.7	13.62%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-8	-1.990e+01	0.0000	1311.0	7.32%	1980.7	6.23%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-8	-1.911e+01	0.0000	2010.0	11.22%	3151.6	9.92%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-7	-1.838e+01	0.0000	297.0	1.66%	375.0	1.18%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-7	-1.816e+01	0.0000	4246.0	23.71%	6980.1	21.97%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-7	-1.799e+01	0.0000	804.0	4.49%	1170.2	3.68%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-7	-1.699e+01	0.0000	357.0	1.99%	471.3	1.48%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-7	-1.661e+01	0.0000	243.0	1.36%	301.6	0.95%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-7	-1.619e+01	0.0000	985.0	5.50%	1479.7	4.66%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-6	-1.610e+01	0.0000	1298.0	7.25%	1996.5	6.28%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-6	-1.594e+01	0.0000	1805.0	10.08%	2845.2	8.96%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-6	-1.594e+01	0.0000	1371.0	7.66%	2119.4	6.67%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-6	-1.592e+01	0.0000	1124.0	6.28%	1710.9	5.39%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-6	-1.573e+01	0.0000	2795.0	15.61%	4527.8	14.25%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-6	-1.556e+01	0.0000	3878.0	21.66%	6390.6	20.12%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-6	-1.507e+01	0.0000	452.0	2.52%	629.4	1.98%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-5	-1.354e+01	0.0000	1758.0	9.82%	2797.4	8.81%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-5	-1.345e+01	0.0000	833.0	4.65%	1255.7	3.95%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-5	-1.309e+01	0.0000	264.0	1.47%	348.5	1.10%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-5	-1.255e+01	0.0000	296.0	1.65%	401.0	1.26%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-5	-1.188e+01	0.0000	639.0	3.57%	952.9	3.00%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-4	-1.104e+01	0.0000	1377.0	7.69%	2188.1	6.89%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-4	-1.100e+01	0.0000	335.0	1.87%	470.2	1.48%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-4	-1.099e+01	0.0000	300.0	1.68%	415.5	1.31%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-4	-1.033e+01	0.0001	365.0	2.04%	522.2	1.64%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-4	-9.601e+00	0.0002	3465.0	19.35%	5794.4	18.24%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-4	-9.492e+00	0.0002	189.0	1.06%	251.2	0.79%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-9.346e+00	0.0002	2321.0	12.96%	3824.9	12.04%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-4	-9.340e+00	0.0002	4071.0	22.73%	6853.5	21.57%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-9.215e+00	0.0002	2362.0	13.19%	3897.6	12.27%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-3	-9.021e+00	0.0003	1334.0	7.45%	2144.3	6.75%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-8.992e+00	0.0003	124.0	0.69%	155.2	0.49%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-8.648e+00	0.0004	1300.0	7.26%	2092.1	6.59%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-8.526e+00	0.0004	633.0	3.53%	974.7	3.07%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-3	-8.283e+00	0.0005	159.0	0.89%	211.4	0.67%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-8.018e+00	0.0007	82.0	0.46%	97.1	0.31%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-3	-7.985e+00	0.0007	554.0	3.09%	849.8	2.67%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.950e+00	0.0007	101.0	0.56%	125.4	0.39%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-7.923e+00	0.0007	373.0	2.08%	553.9	1.74%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-3	-7.446e+00	0.0012	594.0	3.32%	921.7	2.90%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-7.349e+00	0.0013	2168.0	12.11%	3601.0	11.33%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.282e+00	0.0014	480.0	2.68%	734.3	2.31%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-7.200e+00	0.0015	880.0	4.91%	1403.6	4.42%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-7.079e+00	0.0017	108.0	0.60%	139.2	0.44%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-6.809e+00	0.0022	3000.0	16.75%	5054.6	15.91%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-6.214e+00	0.0039	1040.0	5.81%	1689.2	5.32%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.837e+00	0.0057	1048.0	5.85%	1709.6	5.38%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.398e+00	0.0087	97.0	0.54%	130.2	0.41%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-5.341e+00	0.0091	844.0	4.71%	1370.4	4.31%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-5.209e+00	0.0103	778.0	4.34%	1260.4	3.97%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-5.109e+00	0.0113	444.0	2.48%	698.8	2.20%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-4.804e+00	0.0153	1954.0	10.91%	3291.1	10.36%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-4.788e+00	0.0154	168.0	0.94%	246.7	0.78%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-4.715e+00	0.0164	932.0	5.20%	1531.1	4.82%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.704e+00	0.0165	188.0	1.05%	279.3	0.88%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-4.578e+00	0.0186	119.0	0.66%	169.9	0.53%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-4.576e+00	0.0186	1815.0	10.14%	3056.4	9.62%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-4.311e+00	0.0239	741.0	4.14%	1212.7	3.82%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.284e+00	0.0244	1489.0	8.32%	2499.2	7.87%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-4.254e+00	0.0250	643.0	3.59%	1046.8	3.30%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-4.177e+00	0.0268	5187.0	28.97%	8970.3	28.24%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.922e+00	0.0343	601.0	3.36%	980.7	3.09%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.860e+00	0.0362	169.0	0.94%	255.7	0.80%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.770e+00	0.0394	772.0	4.31%	1276.0	4.02%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.753e+00	0.0398	833.0	4.65%	1380.6	4.35%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.568e+00	0.0475	271.0	1.51%	427.4	1.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.538e+00	0.0487	586.0	3.27%	961.8	3.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.529e+00	0.0488	245.0	1.37%	384.8	1.21%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.272e+00	0.0626	462.0	2.58%	754.2	2.37%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.270e+00	0.0626	1429.0	7.98%	2422.2	7.62%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-3.156e+00	0.0694	3973.0	22.19%	6879.1	21.65%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.130e+00	0.0707	2103.0	11.74%	3601.4	11.34%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.082e+00	0.0738	2993.0	16.71%	5161.4	16.25%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.069e+00	0.0742	71.0	0.40%	103.0	0.32%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.058e+00	0.0746	1224.0	6.84%	2072.4	6.52%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.979e+00	0.0802	2917.0	16.29%	5032.6	15.84%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.950e+00	0.0820	78.0	0.44%	114.4	0.36%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.926e+00	0.0835	211.0	1.18%	334.6	1.05%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.833e+00	0.0910	927.0	5.18%	1563.7	4.92%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.823e+00	0.0914	638.0	3.56%	1064.9	3.35%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.774e+00	0.0953	223.0	1.25%	356.8	1.12%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.764e+00	0.0957	1645.0	9.19%	2814.8	8.86%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-2.664e+00	0.1052	78.0	0.44%	116.8	0.37%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.647e+00	0.1063	565.0	3.16%	942.6	2.97%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.604e+00	0.1102	961.0	5.37%	1628.5	5.13%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.546e+00	0.1161	914.0	5.10%	1548.5	4.87%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.515e+00	0.1192	95.0	0.53%	145.6	0.46%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.505e+00	0.1196	1148.0	6.41%	1956.9	6.16%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-2.504e+00	0.1196	809.0	4.52%	1367.5	4.30%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.399e+00	0.1314	171.0	0.95%	273.5	0.86%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.355e+00	0.1365	323.0	1.80%	532.6	1.68%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.339e+00	0.1379	2162.0	12.07%	3735.1	11.76%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.216e+00	0.1550	198.0	1.11%	321.8	1.01%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.076e+00	0.1773	897.0	5.01%	1532.7	4.82%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.951e+00	0.1998	1082.0	6.04%	1859.6	5.85%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.876e+00	0.2140	2562.0	14.31%	4460.1	14.04%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.785e+00	0.2332	659.0	3.68%	1126.5	3.55%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.764e+00	0.2367	30.0	0.17%	44.2	0.14%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.755e+00	0.2377	682.0	3.81%	1167.7	3.68%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.700e+00	0.2496	418.0	2.33%	709.2	2.23%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.659e+00	0.2587	164.0	0.92%	271.5	0.85%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.501e+00	0.3012	449.0	2.51%	768.3	2.42%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.466e+00	0.3104	583.0	3.26%	1003.6	3.16%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.454e+00	0.3124	129.0	0.72%	214.4	0.67%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.443e+00	0.3124	126.0	0.70%	209.0	0.66%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.443e+00	0.3124	126.0	0.70%	209.0	0.66%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.394e+00	0.3265	176.0	0.98%	297.0	0.93%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.367e+00	0.3334	786.0	4.39%	1362.4	4.29%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.356e+00	0.3354	545.0	3.04%	940.8	2.96%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.300e+00	0.3529	609.0	3.40%	1054.4	3.32%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.283e+00	0.3569	820.0	4.58%	1425.8	4.49%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.241e+00	0.3704	1530.0	8.54%	2677.1	8.43%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.213e+00	0.3788	1723.0	9.62%	3019.1	9.50%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.047e+00	0.4449	569.0	3.18%	993.2	3.13%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.032e+00	0.4494	302.0	1.69%	524.0	1.65%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.031e+00	0.4494	372.0	2.08%	647.9	2.04%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-7.999e-01	0.5612	5504.0	30.74%	9750.8	30.69%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.904e-01	0.5637	765.0	4.27%	1351.5	4.25%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.842e-01	0.5643	185.0	1.03%	325.2	1.02%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.428e-01	0.5852	588.0	3.28%	1041.0	3.28%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-7.157e-01	0.5983	10.0	0.06%	17.0	0.05%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.789e-01	0.6177	1144.0	6.39%	2030.1	6.39%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.021e-01	0.6637	771.0	4.31%	1373.7	4.32%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.990e-01	0.6637	311.0	1.74%	555.9	1.75%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.801e-01	0.6718	719.0	4.02%	1282.5	4.04%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-5.083e-01	0.7183	57.0	0.32%	104.9	0.33%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.725e-01	0.7409	325.0	1.81%	586.6	1.85%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.674e-01	0.7411	128.0	0.71%	233.9	0.74%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.647e-01	0.7411	2620.0	14.63%	4675.8	14.72%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-4.643e-01	0.7411	83.0	0.46%	152.3	0.48%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.123e-01	0.7720	91.0	0.51%	168.5	0.53%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.667e-01	0.8042	516.0	2.88%	935.1	2.94%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.165e-01	0.8416	418.0	2.33%	763.7	2.40%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.504e-01	0.8949	275.0	1.54%	510.7	1.61%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.301e-01	0.9090	417.0	2.33%	770.0	2.42%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.134e-01	0.9200	202.0	1.13%	380.6	1.20%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.134e-01	0.9200	23.0	0.13%	48.6	0.15%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.033e-01	0.9208	741.0	4.14%	1357.3	4.27%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.861e-01	0.9325	122.0	0.68%	235.9	0.74%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.644e-01	0.9487	819.0	4.57%	1504.5	4.74%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.524e-01	0.9558	15.0	0.08%	34.8	0.11%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.465e-01	0.9571	3334.0	18.62%	6016.4	18.94%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.386e-01	0.9603	368.0	2.06%	691.1	2.18%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.647e-02	0.9972	243.0	1.36%	468.8	1.48%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.378e-02	1.0000	3667.0	20.48%	6640.9	20.90%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-8.359e-02	1.0000	716.0	4.00%	1336.6	4.21%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.034e-02	1.0000	255.0	1.42%	493.7	1.55%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.433e-02	1.0000	654.0	3.65%	1226.8	3.86%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.896e-02	1.0000	1173.0	6.55%	2194.3	6.91%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.717e-02	1.0000	81.0	0.45%	177.0	0.56%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.649e-02	1.0000	359.0	2.00%	703.3	2.21%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.501e-02	1.0000	401.0	2.24%	782.9	2.46%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.893e-02	1.0000	1121.0	6.26%	2110.0	6.64%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.855e-02	1.0000	36.0	0.20%	88.5	0.28%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.734e-02	1.0000	134.0	0.75%	283.9	0.89%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.038e-02	1.0000	23.0	0.13%	63.7	0.20%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-7.185e-03	1.0000	183.0	1.02%	386.3	1.22%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.027e-03	1.0000	426.0	2.38%	855.2	2.69%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.836e-03	1.0000	5.0	0.03%	23.2	0.07%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.963e-03	1.0000	57.0	0.32%	144.2	0.45%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.760e-04	1.0000	836.0	4.67%	1651.4	5.20%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-4.550e-04	1.0000	44.0	0.25%	123.2	0.39%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.500e-05	1.0000	232.0	1.30%	533.6	1.68%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.000e-06	1.0000	165.0	0.92%	404.5	1.27%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	591.0	3.30%	1278.1	4.02%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	7055.0	39.40%	13163.2	41.43%