Information for motif12


Reverse Opposite:

p-value:1e-24
log p-value:-5.670e+01
Information Content per bp:1.911
Number of Target Sequences with motif432.0
Percentage of Target Sequences with motif3.11%
Number of Background Sequences with motif652.7
Percentage of Background Sequences with motif1.82%
Average Position of motif in Targets96.8 +/- 54.0bp
Average Position of motif in Background98.4 +/- 60.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCCC-----
NTTGTTAATCCCTCTNN

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.92
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCCC----
GANNATTAATCCCTNNN

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.91
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCCC----
NANANTTAATCCCNNNN

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.91
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCCC----
GNNNATTAATCCCTNCN

PH0129.1_Otx1/Jaspar

Match Rank:5
Score:0.90
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCCC----
NNNAATTAATCCCCNCN

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCCC-----
ATAGTTAATCCCCCNNA

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCCC-----
NTAGTTAATCCCCTTAN

PH0125.1_Obox5_2/Jaspar

Match Rank:8
Score:0.89
Offset:-5
Orientation:forward strand
Alignment:-----TTAATCCC----
GATAATTAATCCCTCTT

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.89
Offset:1
Orientation:forward strand
Alignment:TTAATCCC-
-TAATCCCN

PH0122.1_Obox2/Jaspar

Match Rank:10
Score:0.88
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCCC-----
ATAGTTAATCCCCCTCA