Information for motif19


Reverse Opposite:

p-value:1e-15
log p-value:-3.480e+01
Information Content per bp:1.498
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets109.6 +/- 48.8bp
Average Position of motif in Background72.9 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0112.1_Nkx2-3/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCTTAAGCGCTT----
CTTTAAGTACTTAATG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTTAAGCGCTT
--TTAAGTGCTT

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAAGCGCTT----
NATTTAAGTACTTANNA

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAAGCGCTT----
NATTTAAGTACTTNAAA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCTTAAGCGCTT
-CTYRAGTGSY-

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAAGCGCTT---
NTNNTTAAGTGGTTANN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAAGCGCTT---
NTNNTTAAGTGGNTNAN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTTAAGCGCTT
--TTGAGTGSTT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCTTAAGCGCTT
-CTTGAGTGGCT

PH0042.1_Hmx2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTTAAGCGCTT--
ATTCNTTAATTGCTTGT