Information for motif2


Reverse Opposite:

p-value:1e-419
log p-value:-9.658e+02
Information Content per bp:1.588
Number of Target Sequences with motif3715.0
Percentage of Target Sequences with motif26.76%
Number of Background Sequences with motif4596.5
Percentage of Background Sequences with motif12.83%
Average Position of motif in Targets101.7 +/- 52.5bp
Average Position of motif in Background99.0 +/- 60.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TGTTTRCWYW
TGTTTACTTT

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGTTTRCWYW
TGTTTACTTT

MA0148.3_FOXA1/Jaspar

Match Rank:3
Score:0.94
Offset:-4
Orientation:forward strand
Alignment:----TGTTTRCWYW-
TCCATGTTTACTTTG

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.93
Offset:0
Orientation:forward strand
Alignment:TGTTTRCWYW
TGTTTATTT-

MA0593.1_FOXP2/Jaspar

Match Rank:5
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTRCWYW
TNTGTTTACTT-

MA0047.2_Foxa2/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TGTTTRCWYW--
TGTTTACTTAGG

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--TGTTTRCWYW
CNTGTTTACATA

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTRCWYW-----
NSTGTTTRCWCAGBNNN

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---TGTTTRCWYW
NYYTGTTTACHN-

MA0031.1_FOXD1/Jaspar

Match Rank:10
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TGTTTRCWYW
ATGTTTAC---