Information for motif21


Reverse Opposite:

p-value:1e-12
log p-value:-2.937e+01
Information Content per bp:1.730
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.0 +/- 44.3bp
Average Position of motif in Background111.6 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CTAGGTAACTCC-
ANNNCTAGTTAACNGNN

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGTAACTCC
GAAAACTAGTTAACATC

MA0111.1_Spz1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTAGGTAACTCC
-AGGGTAACAGC

MA0105.3_NFKB1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTAGGTAACTCC-
--GGGAAATTCCC

MA0592.1_ESRRA/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTAGGTAACTCC
CCAAGGTCACA--

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTAGGTAACTCC
-CAGGTAAGTAT

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTAGGTAACTCC
TCAAGGTCAN---

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTAGGTAACTCC
SCCTAGCAACAG-

MA0107.1_RELA/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTAGGTAACTCC-
---GGAAATTCCC

MA0071.1_RORA_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTAACTCC
ATCAAGGTCA----