Information for motif23


Reverse Opposite:

p-value:1e-11
log p-value:-2.753e+01
Information Content per bp:1.895
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets84.4 +/- 54.8bp
Average Position of motif in Background147.4 +/- 47.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0479.1_FOXH1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TAAATCGACA
TCCAATCCACA

MA0485.1_Hoxc9/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCGACA
GGCCATAAATCAC--

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TAAATCGACA--
SSAATCCACANN

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCGACA
GGCCATAAATCA---

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCGACA
GGCCATAAATCA---

MA0594.1_Hoxa9/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TAAATCGACA
GCCATAAATCA---

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TAAATCGACA
--AACCGANA

PB0179.1_Sp100_2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TAAATCGACA--
NNTTTANNCGACGNA

MA0038.1_Gfi1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TAAATCGACA
CAAATCACTG

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TAAATCGACA--
GAAASYGAAASY