Information for motif27


Reverse Opposite:

p-value:1e-7
log p-value:-1.616e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.3 +/- 46.2bp
Average Position of motif in Background18.3 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTATCTTTG---
NNNGTAACTANGNNA

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGTATCTTTG
AAGATATCCTT-

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGTATCTTTG-
-----CTTTGT

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTATCTTTG
TAAGTAT-----

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGTATCTTTG
GGTAAGTA------

MA0523.1_TCF7L2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGTATCTTTG------
--TNCCTTTGATCTTN

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGTATCTTTG----
----CCTTTGATGT

MA0042.1_FOXI1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGTATCTTTG---
-GGATGTTTGTTT

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGTATCTTTG-------
NNTTCCTTTGATCTNNA

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGTATCTTTG-------
NNTTCCTTTGATCTANA